[pdbjlvh2]Protein Model on 6cs1_C_1_S

Protein Model on 6cs1_C_1_S_1 (TEMPLATE: 6cs1 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(SPIKE_SARS)	C 1 (A)	polymer(polypeptide(L)) [1066 aa]	Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4
2	b		S 1 (S)	branched(oligosaccharide)	alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	268E 269N (identity: 100.0 %/96.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6cs1_C_1 identity=96.4%

queryA        18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
                :****************************************************************************************************:
6cs1_C_1       5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr          :     S       EEE  TT  EE   S    S EEEEEEEE  TT  EEEEEE SS      EE TT EEEEEEESS    EEEEESS SSSS EEEEE:    
ExpBur          :eeeebeeeeeeeeeebebbebbbbbeeeeeeeeebeebeeebbbbebebbbbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebebebebbbbb:    

queryA       118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
                :****************************************************************************************************:
6cs1_C_1     105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr          :E SS EEEEEE   EEEEEEEEEETTT SEEEEEEES   S  EEEE        S   SS  EEEEEEEEEETTEEEEEEEEEE   SSS      EEE:    
ExpBur          :eebebebbebbbbebbebbbbbbbeeebeeeeebbeeeeeeeeeeeebeeeeeebeeeeeebeebebbbbbeeeeebbbbebeeebeeeeebeebeebbe:    

queryA       218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
                :***********************   **************************************************************************:
6cs1_C_1     205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr          :EEEEEE     SEEEEEEEEEE ---     SEEEE  B EEEEEEEEE TTS EEEEEESSS HHHHHHHHHT SS  SS EE   EEE    EEE   :    
ExpBur          :eeeebebebebeebbbbbbbbee---ebbbbebbbbbbebeebebbbebeeebebeebbbbebebbbebebeeeeeebeebeeebeebebeeeeebbbee:    
Contact         :                                                  bb                                                

queryA       318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
                :**************************************************   ***********************************************:
6cs1_C_1     305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr          :    B  TTTTSS S    TTS EEEE  SEE   TTTSS SSBS  EE --- GGGTS   SS EEEEEEE STTSTT SSS TTHHHHHT B  SSSE:    
ExpBur          :eeeeebebeebbebeebebbbbbeeeebeebbbbbeebeeeeebebeebe---bebeeebeeeebbbbbbbbbbebbeebbeeeeeebbbbbbebbeeeb:    

queryA       418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
                :*************************************************************************************      *********:
6cs1_C_1     405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504
SecStr          :EEEEEEE TTTT BSS BTT EEE   SS   BT          TTS    TTSTT   SEEE  BBSSS GGG  EEEEEEE  ------ EE      :    
ExpBur          :bbbbbbebeeebbeeebeeebebbeeeeeebeeeeebeeebebbeeeeebeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbe------ebebeeeee:    

queryA       518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
                :*********************************************************** ****************************************:
6cs1_C_1     505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr          :   TTS EEEE SS EEEEEEEE      SS  EEE SSSSEEEEB TTT  BEEEE   EE EEEE   TTT S  EEEEESS THHHHHHHHHT EES:    
ExpBur          :ebeeeebbebebeebeeebbbeeeeeebeeeeeebeeeeeeeebbebeeeeeebebeebeebebbbbbbbeeeeeebbbbbeebebeebeebbeeeebee:    

queryA       618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
                :*********************************************         **********************************************:
6cs1_C_1     605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr          :  SS   TT EEE SSEEEESSEE       SEEEETTEEEEEE --------- EEEEEE   S        SSEEEEEEEEEEEEEEEEEE     EE:    
ExpBur          :ebeeeebeeeeeebebbbbbebeeeeeeeeeebebeeebbbbeee---------eebbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe:    

queryA       718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
                :********************************************************************************************        :
6cs1_C_1     705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr          :E HHHHHSSS HHHHHHHTTS SHHHHHHHHHHHHHHHHHHHHHHHSTT SS     S  EETTEE TTTS  SSSTT   HHHHHHHHT  --------:    
ExpBur          :bebeebbbeebeebeeebeeeeebbeebeeebeebbeebbebbeebbeebeeeeeeeeeeebebbebebbbbbeeeeeeebebbebbeeeee--------:    

queryA       818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
                :******        **************************************************************************************:
6cs1_C_1     805:QYGECLXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr          :  B B -------- B   SSSEEE   SS HHHHHHHHHHHHHHHHHHGGGGTTSS     HHHHHHHHHHHHT  THHHHHTHHHHHHHHHHHHHHHH:    
ExpBur          :eebeee--------eeeeeebbbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebe:    

queryA       918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
                :**************************************************  ************************************************:
6cs1_C_1     905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr          :HHHHS SSS HHHHHHHHHHHHHHHHHHHGGG  TTSS SSHHHHTTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS:    
ExpBur          :eebeebeeebeebeebeeebeebbeebeeeeeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebbebbeebbbe:    

queryA      1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
                :****************************************************************************************************:
6cs1_C_1    1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104
SecStr          :   STTTTSSSEEEEE  EEETTEEEEEEEEEEEEEEEEEEEESEEESSS EEE SSSEEEESSSSEEEE SSS   EE  STT EE SSSSSSS EEE :    
ExpBur          :ebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbbeeebbeeeebbbbeeeeebbbbeebbeeeeebbeeebeeeeebeeeeebeee:    

queryA      1118:TVY:1120
                :***:
6cs1_C_1    1105:TVY:1107
SecStr          :   :    
ExpBur          :ebe:

Protein Model on 6cs1_C_1_S_1 (TEMPLATE: 6cs1 )

Input Residue Numbers for Focused Sites