[pdbjlvh2]Protein Model on 6cs1_B_1_S

Protein Model on 6cs1_B_1_S_1 (TEMPLATE: 6cs1 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(SPIKE_SARS)	B 1 (C)	polymer(polypeptide(L)) [1068 aa]	Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4
2	b		S 1 (S)	branched(oligosaccharide)	alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	544R (identity: 100.0 %/96.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6cs1_B_1 identity=96.6%

queryA        18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
                :****************************************************************************************************:
6cs1_B_1       5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr          :             EEE   S  EE  SS    SSEEEEEEEE  TT  EEEEEESTT    S EE TT EEEEEEESS  EEEEEEESSSSTTS EEEEE:    
ExpBur          :eeeebeeeeeeeeeebebbbbbbbbbeeeeeeeeeeeeeebbbbbeeebebbbbeeebbbbeebebeebbbbbbbbbbebbbbbbbbeebeeeeebbbbb:    

queryA       118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
                :****************************************************************************************************:
6cs1_B_1     105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr          :E SS EEEEEEE  B SS EEEEETTT  EEE TTBS  EEEEEEEE            SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS      EEE:    
ExpBur          :bebeeebbbbbbbebbebbbbbbbbeeeebeeebbeeeeeeeeeeeebeeeeeebbeeeeebeebbbbbbbbeeeebbbbebeeeeebeeebeeeebbbe:    

queryA       218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
                :***********************   **************************************************************************:
6cs1_B_1     205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr          :EEEEEE      EEEEEEEEEE ---  B  SEEEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHT S   SEEEEEEEEEE    EEE  S:    
ExpBur          :eeeebebebebeebbbbbbbbbe---eebbbbbbbbbbebeebebbbebeeebebeebbbbebebbbbbebeeeebebeebeeebeebebeeeeebbbbe:    

queryA       318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
                :**************************************************   ***********************************************:
6cs1_B_1     305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr          :S       HHHHS S    SS  B  EE SS    HHHHS SSBS  EE --- TTTTS  BS EE EEEEE HHHHTT SSB TTTIIIII BB SSS :    
ExpBur          :eebeeeeeeebbebeebebbbebeeeebeebbbebeebeeeeebebbebe---eeeeeebeeeebbbbbbbbbbebbebbbeeeeeebbbbbbebbeeeb:    

queryA       418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
                :*************************************************************************************      *********:
6cs1_B_1     405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504
SecStr          : EEEEEE HHHH  TT B S EEE   SS   BS      S   TTS    SSSTT   SEEE  B SSS GGGS EEEEE  B ------ B SS    :    
ExpBur          :bbbbbbebeeebbeeebbeeeebbebeeeebeebeebeeeeebbeeeeebeeeeeebeebeeebebebeeeeeebbbbbbbbbbe------ebbbebeee:    

queryA       518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
                :*********************************************************** ****************************************:
6cs1_B_1     505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr          :    SSEEEEE SS EEEEEEEE      TT SEEE SSSSEEEEE TTT  EEEEE   EEEEEEEES TTT S  EEEEET  HHHHHHHHHTT EES:    
ExpBur          :ebeeeebbebebeebeeebbbeeeeeebeeeeeebeeeeeeeebbebeeeeeebebeebeebbbbbbbbbeeebeebbbbbeebebeebeebbeeebeee:    
Contact         :                          b                                                                         

queryA       618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
                :*********************************************         **********************************************:
6cs1_B_1     605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTXXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr          :  SS   TT EEEETTEEEESSEEEEEEE  SEEEETTEEEEEE --------- EEEEEEE  S        SSEEEEEEEEEEEEEEEEE      EE:    
ExpBur          :eeeeeebeeeeeebebbbbbebeeeeeeeeeebebeeebbbbbee---------eebbbbeeeeeeeeeeeeeeeebebbeebebebeeebbbbbbebbe:    

queryA       718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
                :********************************************************************************************        :
6cs1_B_1     705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr          :E HHHHHTSS HHHHHTTGGG SHHHHHHHHHHHHHHHHHHHHHHHHTT SS     S  B SS B TTTS  TTTT SS HHHHHHHHTT --------:    
ExpBur          :bebebbbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeeeeeeeeeeeeeeeebbebeebbbbeeeeeeebebbeebbeebe--------:    

queryA       818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
                :*******      ***************************************************************************************:
6cs1_B_1     805:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr          :  BEEE ------ EEE  SS EEE   SS HHHHHHHHHHHHHHHTTSTTHHHHSS     HHHHHHHHHHHHT  THHHHHTTTHHHHHHHHHHHHHH:    
ExpBur          :eebeeee------eeeeeeeebbebeeeeeeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeebeeebbeebbebbeebb:    

queryA       918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
                :**************************************************  ************************************************:
6cs1_B_1     905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr          :HHHHS  STTHHHHHHHHHHHHHHHHHHHTTS  TTSS SSSHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS:    
ExpBur          :eebeeeeeebeebeebeeebeebbeebeeebeeeeebebeebeebbeeeeeeebeeebeebbebbbebbeebbeebeeebeebeebbeebbebbeebbbe:    

queryA      1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
                :****************************************************************************************************:
6cs1_B_1    1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104
SecStr          :    TTSSSSSSEEEE  EEETTEEEEEEEEEEEEEEEEEEEES EEETTEEEEESSSEEEE SS EEEE SSS   B   SSSEEE S SSSSSS B  :    
ExpBur          :ebeeeebbbeeebbbbbbbbbbebbbbbbbbbeebeeeebebeebbbbeeebbeeeeebbbeeeeeebbbbeebebeeebbeebbeeeeebeeeeeebee:    

queryA      1118:TVY:1120
                :***:
6cs1_B_1    1105:TVY:1107
SecStr          :   :    
ExpBur          :ebe:

Protein Model on 6cs1_B_1_S_1 (TEMPLATE: 6cs1 )

Input Residue Numbers for Focused Sites