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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | A 1 (B) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
2 | b | J 1 (J) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 602N 604T (identity: 100.0 %/96.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6cs1_A_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6cs1_A_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : SS EEEE TT B S SEEEEEE B TT EEEEEEE TT EEE TTEEEEEEEESS EEEEEEESS STTS EEEEE: ExpBur :eeeebeeeeeeeeeebebbebbbbbeeeeeeeeeeeeeeebbbbbeeebbbbebeeebbbbeebebeebbbbbbbbebbbbbbbbbbeebeeeeebbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6cs1_A_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SSEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEE SS B E: ExpBur :bebebbbbebbbbebbeebbbbbeeeeeebeebbbeeeeeeeeeeeebeeeeeebbeeeeebeebbbbbbbeeeeebbbbebeeebeeeeebbeeebebe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6cs1_A_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :E EE EEEEEEEEE --- SEEEEEEE B EEEEEE TTS EEEEEESSSSHHHHHHHHHT SS SEEEEEEEEEE EEEE : ExpBur :eeeebebebebeebbbbbbbbbe---eebbbebbbbbbebeebebbbebeeeeebeebbbbbbebbbebebeeeeeebeebeeebeebebeeeeebbbee: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************** ***********************************************: 6cs1_A_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr : S SB GGGTTS S STT B EE SEE HHHHT S B EE --- THHHH S EE EEEEEEGGGSTTSSSS TTTHHHHT SS : ExpBur :eeeeebebeebbebeebebbbebeebeeeebebbbebbeeeeebeeeeee---eeeebebebeebbbbbbbbbbebbebbbeeeeeebbbebbbbbeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6cs1_A_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr : EEEEEE TTTS SS BTT EEE SS TT B SSS TTSTT B EEE B SSS STTSEEEEEEE B ------ EE : ExpBur :bbbbbbbbeeebbeeebbeebebbebeeeebeebeebeeeebbbeeeeebeeeeeebeebbeebbbeeeeeebebbbbbbbbbee------ebebeeeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6cs1_A_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : SS EEEEESS EEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEES TTT EEEEET SHHHHHHHHTT EES: ExpBur :eeeeeebbebebeeeeeebbbeeeeeebeeeeeeeeeeeeebebbebeeeeebbebeebbebbbbbbbbbbeebeeebbbbeebebeebeebbeeeebee: Contact : b b queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** **********************************************: 6cs1_A_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS TT EEE SSEEEES EEEEEEE SEEEETTEEEEEE -------- EEEEEEE S SSEEEEEEEEEEEEEEEEE EE: ExpBur :ebeeeebeebeeeeeebbbbebeeeeeeeeeebebeeeebbbeeee--------ebbbbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbbbbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6cs1_A_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr :E HHHHHTSS HHHHHHHGGG S TTHHHHHHHHHHHHHHHHHHHHHTT S S EETTEE TTTS TTSTT S HHHHHHHHTT --------: ExpBur :bebeebbeeeeeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeeeeebeebeeebbebeebbbeeeeeeeebebbebbeeeee--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :****** ***************************************************************************************: 6cs1_A_1 805:QYGECLXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : B B ------- B SSSEEE SS HHHHHHHHHHHHHHHTTTGGGTTTSS HHHHHHHHHHHTT THHHHTTHHHHHHHHHHHHHHHH: ExpBur :eebeee-------eeeeeeeebbebeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebbeebbeeeeeebbeebbebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6cs1_A_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHH SSHHHHHHHHHHHHHHHHHHTTSS TTSS SSHHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS: ExpBur :eebeeeeeebeebeebeeebeebbeebbeeeeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbe: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6cs1_A_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : STBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EEETTEEEEESSSEEEE SS EEEE SSS B SSSEEEEEESSSSSS EE : ExpBur :bbeeeeebbeeebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeeeebbeeeeeebbbeebbebeeebeeebbeeeeebeeeeeeeeb: queryA 1118:TVY:1120 :***: 6cs1_A_1 1105:TVY:1107 SecStr : : ExpBur :ebe: |