[pdbjlvh2]Protein Model on 6cs1_A_1_G

Protein Model on 6cs1_A_1_G_1 (TEMPLATE: 6cs1 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(SPIKE_SARS)	A 1 (B)	polymer(polypeptide(L)) [1068 aa]	Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4
2	b		G 1 (G)	branched(oligosaccharide)	alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	699N 904Q 908Q 1053Q (identity: 100.0 %/96.6 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6cs1_A_1 identity=96.6%

queryA        18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
                :****************************************************************************************************:
6cs1_A_1       5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr          :     SS      EEEE TT  B    S    SEEEEEE  B  TT EEEEEEE TT     EEE TTEEEEEEEESS  EEEEEEESS STTS EEEEE:    
ExpBur          :eeeebeeeeeeeeeebebbebbbbbeeeeeeeeeeeeeeebbbbbeeebbbbebeeebbbbeebebeebbbbbbbbebbbbbbbbbbeebeeeeebbbbb:    

queryA       118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
                :****************************************************************************************************:
6cs1_A_1     105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr          :E SSEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEE     S   SSEEEEEEEEEEEETTEEEEEEEEEEEEE SS      B E:    
ExpBur          :bebebbbbebbbbebbeebbbbbeeeeeebeebbbeeeeeeeeeeeebeeeeeebbeeeeebeebbbbbbbeeeeebbbbebeeebeeeeebbeeebebe:    

queryA       218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
                :***********************   **************************************************************************:
6cs1_A_1     205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr          :E   EE      EEEEEEEEE  ---     SEEEEEEE B  EEEEEE TTS EEEEEESSSSHHHHHHHHHT SS  SEEEEEEEEEE    EEEE  :    
ExpBur          :eeeebebebebeebbbbbbbbbe---eebbbebbbbbbebeebebbbebeeeeebeebbbbbbebbbebebeeeeeebeebeeebeebebeeeeebbbee:    

queryA       318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
                :**************************************************   ***********************************************:
6cs1_A_1     305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr          : S SB  GGGTTS S    STT B  EE SEE   HHHHT S B   EE --- THHHH   S EE EEEEEEGGGSTTSSSS TTTHHHHT    SS  :    
ExpBur          :eeeeebebeebbebeebebbbebeebeeeebebbbebbeeeeebeeeeee---eeeebebebeebbbbbbbbbbebbebbbeeeeeebbbebbbbbeeeb:    

queryA       418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
                :*************************************************************************************      *********:
6cs1_A_1     405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504
SecStr          : EEEEEE TTTS  SS BTT EEE   SS   TT        B SSS    TTSTT B  EEE  B SSS STTSEEEEEEE B ------ EE      :    
ExpBur          :bbbbbbbbeeebbeeebbeebebbebeeeebeebeebeeeebbbeeeeebeeeeeebeebbeebbbeeeeeebebbbbbbbbbee------ebebeeeee:    

queryA       518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
                :*********************************************************** ****************************************:
6cs1_A_1     505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr          :    SS EEEEESS EEEEEEEE      TT  EEE SSSSEEEEE TTT  EEEEE   EEEEEEEES TTT    EEEEET  SHHHHHHHHTT EES:    
ExpBur          :eeeeeebbebebeeeeeebbbeeeeeebeeeeeeeeeeeeebebbebeeeeebbebeebbebbbbbbbbbbeebeeebbbbeebebeebeebbeeeebee:    

queryA       618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
                :**********************************************        **********************************************:
6cs1_A_1     605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr          :  SS   TT EEE SSEEEES EEEEEEE  SEEEETTEEEEEE  -------- EEEEEEE  S        SSEEEEEEEEEEEEEEEEE      EE:    
ExpBur          :ebeeeebeebeeeeeebbbbebeeeeeeeeeebebeeeebbbeeee--------ebbbbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbbbbe:    
Contact         :                                                                                 b                  

queryA       718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
                :********************************************************************************************        :
6cs1_A_1     705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr          :E HHHHHTSS HHHHHHHGGG S TTHHHHHHHHHHHHHHHHHHHHHTT  S     S  EETTEE TTTS  TTSTT S HHHHHHHHTT --------:    
ExpBur          :bebeebbeeeeeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeeeeebeebeeebbebeebbbeeeeeeeebebbebbeeeee--------:    

queryA       818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
                :******       ***************************************************************************************:
6cs1_A_1     805:QYGECLXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr          :  B B -------  B   SSSEEE   SS HHHHHHHHHHHHHHHTTTGGGTTTSS     HHHHHHHHHHHTT  THHHHTTHHHHHHHHHHHHHHHH:    
ExpBur          :eebeee-------eeeeeeeebbebeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebbeebbeeeeeebbeebbebbeebe:    
Contact         :                                                                                      b   b         

queryA       918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
                :**************************************************  ************************************************:
6cs1_A_1     905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr          :HHHHH   SSHHHHHHHHHHHHHHHHHHTTSS  TTSS SSHHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS:    
ExpBur          :eebeeeeeebeebeebeeebeebbeebbeeeeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbe:    

queryA      1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
                :****************************************************************************************************:
6cs1_A_1    1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104
SecStr          :   STBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EEETTEEEEESSSEEEE SS EEEE SSS   B   SSSEEEEEESSSSSS EE :    
ExpBur          :bbeeeeebbeeebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeeeebbeeeeeebbbeebbebeeebeeebbeeeeebeeeeeeeeb:    
Contact         :                                   b                                                                

queryA      1118:TVY:1120
                :***:
6cs1_A_1    1105:TVY:1107
SecStr          :   :    
ExpBur          :ebe:

Protein Model on 6cs1_A_1_G_1 (TEMPLATE: 6cs1 )

Input Residue Numbers for Focused Sites