Protein Model on 6cs1_A_1_C_1
(TEMPLATE: 
6cs1
)Protein Model on 6cs1_A_1_C_1
(TEMPLATE: 6cs1
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (B) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
| 2 | b | C 1 (A) | polymer(polypeptide(L)) [1066 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | 42Y 44D 45E 46I 47F 48R 49S 50D 51T 218P 269N 719D 722M 727D 737Q 738Y 744Q 766Q 768K 769Q 770M 771Y 772K 779F 822C 831L 835Q 836K 837F 838N 841T 843L 844P 845P 846L 847L 848T 851M 854A 855Y 865T 868W 872A 875A 876L 877Q 878I 879P 882M 886Y 895Q 896N 899Y 900E 902Q 976D 984Q 987Q 994L 1012S 1013E 1016L 1017G 1021R 1095Q (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6cs1_A_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6cs1_A_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr : SS EEEE TT B S SEEEEEE B TT EEEEEEE TT EEE TTEEEEEEEESS EEEEEEESS STTS EEEEE:
ExpBur :eeeebeeeeeeeeeebebbebbbbbeeeeeeeeeeeeeeebbbbbeeebbbbebeeebbbbeebebeebbbbbbbbebbbbbbbbbbeebeeeeebbbbb:
Contact : b bbbbbbbb
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6cs1_A_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr :E SSEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEE SS B E:
ExpBur :bebebbbbebbbbebbeebbbbbeeeeeebeebbbeeeeeeeeeeeebeeeeeebbeeeeebeebbbbbbbeeeeebbbbebeeebeeeeebbeeebebe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:*********************** **************************************************************************:
6cs1_A_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr :E EE EEEEEEEEE --- SEEEEEEE B EEEEEE TTS EEEEEESSSSHHHHHHHHHT SS SEEEEEEEEEE EEEE :
ExpBur :eeeebebebebeebbbbbbbbbe---eebbbebbbbbbebeebebbbebeeeeebeebbbbbbebbbebebeeeeeebeebeeebeebebeeeeebbbee:
Contact :b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:************************************************** ***********************************************:
6cs1_A_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr : S SB GGGTTS S STT B EE SEE HHHHT S B EE --- THHHH S EE EEEEEEGGGSTTSSSS TTTHHHHT SS :
ExpBur :eeeeebebeebbebeebebbbebeebeeeebebbbebbeeeeebeeeeee---eeeebebebeebbbbbbbbbbebbebbbeeeeeebbbebbbbbeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:************************************************************************************* *********:
6cs1_A_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504
SecStr : EEEEEE TTTS SS BTT EEE SS TT B SSS TTSTT B EEE B SSS STTSEEEEEEE B ------ EE :
ExpBur :bbbbbbbbeeebbeeebbeebebbebeeeebeebeebeeeebbbeeeeebeeeeeebeebbeebbbeeeeeebebbbbbbbbbee------ebebeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:*********************************************************** ****************************************:
6cs1_A_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr : SS EEEEESS EEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEES TTT EEEEET SHHHHHHHHTT EES:
ExpBur :eeeeeebbebebeeeeeebbbeeeeeebeeeeeeeeeeeeebebbebeeeeebbebeebbebbbbbbbbbbeebeeebbbbeebebeebeebbeeeebee:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:********************************************** **********************************************:
6cs1_A_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr : SS TT EEE SSEEEES EEEEEEE SEEEETTEEEEEE -------- EEEEEEE S SSEEEEEEEEEEEEEEEEE EE:
ExpBur :ebeeeebeebeeeeeebbbbebeeeeeeeeeebebeeeebbbeeee--------ebbbbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbbbbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:******************************************************************************************** :
6cs1_A_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr :E HHHHHTSS HHHHHHHGGG S TTHHHHHHHHHHHHHHHHHHHHHTT S S EETTEE TTTS TTSTT S HHHHHHHHTT --------:
ExpBur :bebeebbeeeeeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeeeeebeebeeebbebeebbbeeeeeeeebebbebbeeeee--------:
Contact : b b b bb b b bbbbb b
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
:****** ***************************************************************************************:
6cs1_A_1 805:QYGECLXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr : B B ------- B SSSEEE SS HHHHHHHHHHHHHHHTTTGGGTTTSS HHHHHHHHHHHTT THHHHTTHHHHHHHHHHHHHHHH:
ExpBur :eebeee-------eeeeeeeebbebeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebbeebbeeeeeebbeebbebbeebe:
Contact : b b bbbb b bbbbbb b bb b b b bbbbb b b bb bb b
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:************************************************** ************************************************:
6cs1_A_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr :HHHHH SSHHHHHHHHHHHHHHHHHHTTSS TTSS SSHHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS:
ExpBur :eebeeeeeebeebeebeeebeebbeebbeeeeeeeebeeeebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbe:
Contact : b b b b bb bb
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6cs1_A_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104
SecStr : STBTTBSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EEETTEEEEESSSEEEE SS EEEE SSS B SSSEEEEEESSSSSS EE :
ExpBur :bbeeeeebbeeebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeeeebbeeeeeebbbeebbebeeebeeebbeeeeebeeeeeeeeb:
Contact : b b
queryA 1118:TVY:1120
:***:
6cs1_A_1 1105:TVY:1107
SecStr : :
ExpBur :ebe:
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[assembly_id:1]
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