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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | B 1 (C) | polymer(polypeptide(L)) [1069 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
2 | b | R 1 (R) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 1080N 1082T 1083S 1084W 1085F (identity: 100.0 %/96.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6crx_B_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6crx_B_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : S B EEEE TT EE SS SSEEEEEEEE TT EEEEEEESTTB S EE TT EEEEEEESS EEEEEEESSSSTTS EEEEE: ExpBur :eeeebeeeeeeeeeebebbebbbbbbeeeeeeeeeeebeebbbbbebebebbbbeeebbbbeebebeebbbbbbbbbbebbbbbbbbeebeeeeebbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6crx_B_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SS EEEEEEEEEEEEEEEEEEETTT EEEEEEEEEEEEEEEEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS EEE: ExpBur :bebeebbbebbbbebbeebbbbbbeeeeebeebbbbeeeeeeeeeeebeeeeeebbeeeeebeebebbbbbeeeeebebbebeeeeebeeebeeeebbbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6crx_B_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE SEEEEEEEEEE --- B SEEEEEEE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHT SS SEEEEEEEEEE EEE S: ExpBur :eeeebebebebeebbbbbbbbbe---eebbbbbbbbbbebeebebbbebeeebebeebbbbebebbbbbebeeeebebeebeeebeebebeeeeebbbbe: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************** ***********************************************: 6crx_B_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr :S B HHHHS S SSS B EE S B HHHHS SSBS EE --- TTTTS BSSEE EEEEEEHHHHTT SS TTHHHHTT B SS : ExpBur :eeeeeeebeebbebeebebbbebeeeebeebbbebeebeeeeebeebeee---eeebeebbeeebbbbbbbbbbebbebbbeeeeeebbbbbbebbeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6crx_B_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr : EEEEEE TTTT TT BTT EEE SS SSB S B TTS SSSTT B SEEE B SSS GGGSEEEEEE B ------ B SS : ExpBur :bbbbbbebeeebbeeebbeeeebbebeeeebeebeebeeeeebbeeeeebeeeeeebeebbeebbbebeeeeeebbbbbbbbbbe------ebbbebeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6crx_B_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : SSEEEEE SS EEEEEEEE TT EEE SSSSEEEEE TTT EEEEE EEEEEEEE TTT S EEEEET HHHHHHHHHTT EES: ExpBur :ebeeeebbebebeebeeebbbeeeeeebeeeeeebeeeeeeeebbebeeeeeebebeebbeebbbbbbbbeeebeebbbbbeebebeebeebbeeebbee: queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** **********************************************: 6crx_B_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS TT EEE SSEEEES EEEEEEE SEEEETTEEEEEE -------- EEEEEEE S SSEEEEEEEEEEEEEEEEEE EE: ExpBur :ebeeeebeeeeeebebbbbbebeeeeeeeeeebebeeebbbbeeee--------ebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe: queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6crx_B_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr :E HHHHHTSS HHHHHHHHTT THHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS TTSTTSS HHHHHHHHHH --------: ExpBur :bebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeeeeeeeeeeeebebebbebbbbbbbeeeeeeebebbeebbeebe--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :******* ***************************************************************************************: 6crx_B_1 805:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : BEEE ------ EEE SS EEE SS HHHHHHHHHHHHHHHTTSTTHHHHSS HHHHHHHHHHTTT THHHHHTTTHHHHHHHHHHHHHH: ExpBur :eebeeee------eeeeeeeebbebeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6crx_B_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHH SSSHHHHHHHHHHHHHHHHHHHTTS TTSS S SHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS: ExpBur :eebeeeeeebeebeebeeebeebbeebbeebeeeeebeeeebeebeeeeeeeebeeebbebbebbbebbeebbeebeeebeebeebbeebbebbeebbbb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6crx_B_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : TTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE SEEEETTEEEEESSSEEEE SS EEEE SSS B SSSEEEEEESSSSTTEE : ExpBur :bbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebeebbbeeeebbeeeeebbbeeeeeebbbbeebebeeebeeeebeeeeebeeeeebbee: Contact : b bbbb queryA 1118:TVY:1120 :***: 6crx_B_1 1105:TVY:1107 SecStr : : ExpBur :ebe: |