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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1068 aa] | Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4 | |
2 | b | T 1 (T) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 602N 604T 630Q (identity: 100.0 %/96.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6crw_C_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117 :****************************************************************************************************: 6crw_C_1 5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104 SecStr : S B EEEEESB B SS S EEEEEEEE TTEEEEEEEE TTB EE TTEEEEEEEESS EEEEESS STTS EEEEE: ExpBur :eeeebeeeeebeeeebebbebbbbbbeeeeeeeeeeebeebbbbbebebbbbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbeebeeeebbbbbb: queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217 :****************************************************************************************************: 6crw_C_1 105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204 SecStr :E SS EEEEEEEEEEEEEEEEEEBTTT EEEEEEEEEEEEEEEEEE S SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS B BE: ExpBur :bebeebbbebbbbebbeebbbbbbeeebebeebebeeeeeeeeeeeebeeeeeebbeeeeebeebbbbbbbeeeeebbbbeeebebebeeebeeeeebbe: queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317 :*********************** **************************************************************************: 6crw_C_1 205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304 SecStr :EEEEEE SEEEE B --- EEEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHT SS SEEEE EEE EEE S: ExpBur :eeeebebebebeebbbbbbbbbe---eebbbbbbbbbbebeebebbbebeeeeebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbe: queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417 :************************************************* ***********************************************: 6crw_C_1 305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCXXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404 SecStr :S B TTTTS S STT EEEEE SB SHHHHS SSBS B ---- THHHH BS EEEEEEEE HHHHTT SSS TTHHHHTT B SS : ExpBur :eebeeeebeebbebeebebbbebeeeebeebbbebebbeebeebeeeee----eebeeebbeeebbbbbbbbbbebbeebeeeeeebbbbebbbbbeeeb: queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517 :************************************************************************************* *********: 6crw_C_1 405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504 SecStr : EEEEE TTTS BSS B S EEE SS BT S B TTS TTSTT B SEEE BBSSS GGGS EEEEEEEE ------ B SS : ExpBur :bbbbbebbeeebbeeebbeeeebbebbeeebeebeebeeeebbbeeeeebeeeeeebeebbeebbbeeeeeebebbbbbbbbbbe------ebbbebeee: queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617 :*********************************************************** ****************************************: 6crw_C_1 505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604 SecStr : SSEEEEEETTEEEEEEEEE TT EE SSS EEE TTT EEEEE EE EEEEES TTT S EEEEET HHHHHHHHHTT EES: ExpBur :ebeeeebbebebeebeeebbbeeeeeebeeeeeebeeeeeeebbbbbeeeeebbebeebbeebbbbbbbbeeebeebbbbbeebebeebeebbeeebbee: Contact : b b queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717 :********************************************** **********************************************: 6crw_C_1 605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704 SecStr : SS TT EEEETTEEEES EEEEEEE SEEEETTEEEEEE -------- EEEEEEE S SSB EE SEEEEEEEEEEE EE: ExpBur :ebeeeebeeeeeeeebbbbbebeebeeeeeeebebeeebbbbbeee--------ebbbbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbebbe: Contact : b queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817 :******************************************************************************************** : 6crw_C_1 705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804 SecStr :E SIIIIISS HHHHHHHGGG THHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS TTS SS HHHHHHTTT --------: ExpBur :bebeebbbeebeebeebbeeeeeebeebeeebeebbebbeebbeebbeeeeeeeeeeeebebebbebebbbbeeeeeeeebebbeebbebbe--------: queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917 :******* ***************************************************************************************: 6crw_C_1 805:QYGECLGXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904 SecStr : BEEE ------ EEE SSSEEE SS HHHHHHHHHHHHHHHTTTTHHHHHSS HHHHHHHHHHTTT THHHHHTHHHHHHHHHHHHHHHH: ExpBur :eebeeee------eeeeeeebbbebeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebbebbeebe: queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017 :************************************************** ************************************************: 6crw_C_1 905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004 SecStr :HHHHH SSSHHHHHHHHHHHHHHHHHHHTTS TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS: ExpBur :eebeeeeeebeebeebeeebeebbeebeeeeeeeeebebbebeebeeeeeeeebeeebeebbebbbebbeebbeebeeebeebeeebeebbebbeebbbb: queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117 :****************************************************************************************************: 6crw_C_1 1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104 SecStr : SSSTTSSSEEEEEEEEE SSEEEEEEEEEEE EE EEESEEEETTEEEEESSSEEEE SS EEEE SSS B TTSEEEEEESSSSSSEE : ExpBur :ebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebebeebbbbeeebbeeeeeebbeeeeeebbbeeebeeeeebeeebbeeeeebeeeeeebee: queryA 1118:TVY:1120 :***: 6crw_C_1 1105:TVY:1107 SecStr : : ExpBur :ebe: |