Protein Model on 6crw_B_1_N_1 (TEMPLATE: 6crw )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS) B 1 (B) polymer(polypeptide(L)) [1068 aa] Spike glycoprotein,Fibritin :SPIKE_CVHSA:D9IEJ2_BPT4
2 b N 1 (N) branched(oligosaccharide) beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 699N 700F 904Q 907N 908Q (identity: 100.0 %/96.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6crw_B_1 identity=96.6%
queryA        18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
                :****************************************************************************************************:
6crw_B_1       5:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 104
SecStr          :    BS  B    EEEEE S S    SS    SEEEEEEEEE  TTEEEEEEEE TTB   S EE TTEEEEEEEESS    EEEEESSSSTTS EEEEE:    
ExpBur          :eeeebeeeeebeeeeeebbbbbbbbeeeeeeeeeeeebeebbbbbebebebbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeeeebbbbb:    

queryA       118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
                :****************************************************************************************************:
6crw_B_1     105:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 204
SecStr          :E SS EEEEEEEE   SS EEEEETTTTEEEE TT S EEEEEEEEE        S   SSEEEEEEEEEEEETTEEEEEEEEEEEEESSS        E:    
ExpBur          :bbbeebbbebbebebbebbbbbbeeeebebeebbbbeebeeeeeeeebeeeeeebbeeeeebeebbbbbbbeeeeebebbebeeebebeebbeeeebbbe:    

queryA       218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
                :***********************   **************************************************************************:
6crw_B_1     205:PIFKLPLGINITNFRAILTAFSPXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 304
SecStr          :EEEEEE      EEEEEEEEEE --- B    EEE  EE EEEEEEEEE TTS EEEEEETTSSHHHHHHHHHTSS   SEEEEEEEEEE    EEEE  :    
ExpBur          :eebebebebebeebbbbbbbbbe---ebbbbbbbbbbbebeebebbbebeeebebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbe:    

queryA       318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
                :**************************************************   ***********************************************:
6crw_B_1     305:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYXXXATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 404
SecStr          : SSS   HHHHTS S    STT EEEEE SEE   TTTTS SSB   EE --- THHHH EES EEEEEEEEEHHHHTT SSS TTHHHHHT B  SSS :    
ExpBur          :eeeebbebeebbebeebebbebbeeeebeebebebeebeeeeebeeeebe---bebbeebeeeebbbbbbbbbbebbebbbbeeeeebbbebbebbeeeb:    

queryA       418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
                :*************************************************************************************      *********:
6crw_B_1     405:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFEXXXXXXTVCGPKLST: 504
SecStr          : EEEEEE TTTT BTT B S EEE   SS   BT        B SSS    SS TT B  EEE  BBSSS GGGSEEEEEEEE  ------ EE      :    
ExpBur          :bbbbbbebeeebbeeebbeebebbeebeeebeeebebeeeebbbeeeeeeeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbe------ebebbeeee:    

queryA       518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
                :*********************************************************** ****************************************:
6crw_B_1     505:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 604
SecStr          :    SS EEEEETTEEEEEEEEE      TT  EE  SSS   EEE TTT  EEEEE   EEEEEEEES TTT S  EEEEES  HHHHHHHHHTT EES:    
ExpBur          :ebeeeebbebebeeeeeebbbeeeeeeeeeeeeeeeeeeeeeebbbbeeeeebbebeebbebbbbbbbbbeeeeeebbbbbeebebeebeebeeeebbee:    

queryA       618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
                :**********************************************        **********************************************:
6crw_B_1     605:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVXXXXXXXXKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 704
SecStr          :  SS   TT EEE SSEEEES EEEEEEE  SEEEETTEEEEEE  -------- EEEEEEE  S        SSEEEE  EEEEEEEEEEE      EE:    
ExpBur          :ebeeeebeeeeeebeebbbbebeebeeeeeeebebeeebbbbeeee--------eebbbbeeeeeeeeeeeeeeeebebbeebebebeebbbbbbbebbe:    
Contact         :                                                                                 bb                 

queryA       718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
                :********************************************************************************************        :
6crw_B_1     705:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTXXXXXXXX: 804
SecStr          :E HHHHTSSS HHHHHHHTTT  HHHHHHHHHHHHHHHHHHHHHHHH   SS     S  EETTEE TTTS  TTSTT S HHHHHHHHHH --------:    
ExpBur          :bebeebbbbebeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeebebebbebeebbbeeeeeeebbebbbbbbeebe--------:    

queryA       818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
                :******       ***************************************************************************************:
6crw_B_1     805:QYGECLXXXXXXXLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 904
SecStr          :  BEE -------  EE  SS EEE   SS HHHHHHHHHHHHHHHHHHTTHHHHSS     HHHHHHHHHHHTT  HHHHHTTHHHHHHHHHHHHHHHH:    
ExpBur          :eebeee-------eeeeeeeebbebeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebe:    
Contact         :                                                                                      b  bb         

queryA       918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
                :**************************************************  ************************************************:
6crw_B_1     905:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1004
SecStr          :HHHHH   TTHHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS:    
ExpBur          :eebeeeeeebeebeebeeebeebbeebeeebeeeeebeebebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeeebeebbebbeebbbe:    

queryA      1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
                :****************************************************************************************************:
6crw_B_1    1005:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1104
SecStr          :   STTSSSSSEEEEEEEEEETTEEEEEEEEEEEE  EEEEEES EEETTEEEEESSSEEEE SS EEEE SSS   B   SSSEEEEEETTSSSS EES:    
ExpBur          :ebeeeebbbeeebbbbbbbbbeebbbbbbbbbeeeeeeebeebebbbeeeebbeeeeeebbeeeeebbbbeeebeeeeebeeeebeeeeebeebeebbee:    

queryA      1118:TVY:1120
                :***:
6crw_B_1    1105:TVY:1107
SecStr          :   :    
ExpBur          :ebe:

Input Residue Numbers for Focused Sites

ex) 2,15,123