Protein Model on 6acj_A_1_B_1
(TEMPLATE: 
6acj
)Protein Model on 6acj_A_1_B_1
(TEMPLATE: 6acj
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | 42Y 45E 46I 47F 48R 85D 110K 112Q 158N 160T 191D 192G 218P 221K 223P 225G 226I 227N 269N 719D 721N 722M 727D 737Q 738Y 739G 740S 741F 744Q 747R 761R 768K 769Q 770M 771Y 772K 776L 832I 833C 834A 835Q 836K 837F 838N 845P 846L 848T 851M 855Y 865T 868W 869T 872A 875A 876L 877Q 878I 879P 882M 885A 886Y 889N 894T 895Q 896N 899Y 900E 945V 948L 949S 960N 963L 964S 965R 966L 967D 984Q 987Q 991T 994L 998A 1009T 1013E 1021R (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acj_A_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acj_A_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S EEE S B SSS SB EEEEEE TT EEEEEEE SS EE SS EEEEEEESS EEEESS STT EEEEEE:
ExpBur :eeeebeeeeeeeeeebebbebbbbeeeeeeeeeeeeeeeebbbebebebebbebeeebbbbeebebeebbbbbbbbbbebbbbbbbbeebeeebebbbbb:
Contact : b bbbb b b b
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acj_A_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr :E SSSEEEEEEE SS EEE SSS SS EEEE S EEEEEEEEEEEETTEEEEEE EEEE SSS SS BE:
ExpBur :beeebbbbebbbbebbebbbbbbeeeebebebeebbeeeeeeeeeeebeeeebebeeeeeebebbbbbbbbeeeeebbbbebebebeeeeebbebebbbe:
Contact : b b bb
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acj_A_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEEE EEEE EEE ---- SEEEEEEE EEEEEEEEE TT EEEEEESSS HHHHHHHHHT SS SS EEEEEEEB EE :
ExpBur :eeeebeeeeebeebbbbbbbbe----ebbbbebbbbbbebeebebbbebbeebebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbe:
Contact :b b b bbb b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6acj_A_1 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr : B THHHHSS S STT EEEEE SSB STTTS S SEEEESSS SGGGTTS BSSEEEEEEEE SSHHHHSSSS SHHHHS SSS :
ExpBur :eeeeebebeebbebeebbbbbebeebebeebebebeebeeeeeeeeeebeeeeeeebeeebbbbbebbbbbbbbebbebbbeeeeeebbbebbebeeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************************************************:
6acj_A_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
SecStr : EEEEEE TTTTS TT B S EE SS TT BBTTB TTSTT B EE B SSS GGGS EEEEEEE SSS BB S :
ExpBur :bbbbbbebeeebbeeebbeebebbeeeeeebeeebeeeeeeebbeeeeebebeeeebeebeeebebeeebeeeebbbbbbbbbbeeeeeebbbbbeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acj_A_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : SS EEEESSS EEEEEEEE SS TTTS EEE TTS EEEEE EEEEEEE SSS EEE SB SSHHHHHHTTT BSS:
ExpBur :eeeeeebbebbbbeeeeebbbeeeeeebeeeebeeeeeeeeeebbbbeeeeebebeeebbebbbbbbbbbeeeeeebbbbbeebebeebeebbeeeebeb:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acj_A_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS S B SSS B S B S SEE SSS EE ------------- BEE S SS B S B EEEEEE EE:
ExpBur :ebeeeeeebebeeeeebbbbbbeeeeeeeebebebeeebbbbe-------------ebbbeeeeeeeeeeeeeeeeeebbbebebebeebbbbbbbbbbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acj_A_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr :E HHHHSS S SHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHTT S STT TTTS TTSSSSS HHHHHHHHH ------:
ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeeeebebbebeebbbeeeeeeeebebbbbbeeebeee------:
Contact : b bb b bbbbb b b b bbbbb b
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acj_A_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TTSEEE SS HHHHHHHHHHHHHHHSSS S SSSS SHHHHHHHTTTTT HHHHTTSHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbeebbebbeebe:
Contact : bbbbbbb bb b b b b bb b bbbbb b bb b bbb bb
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acj_A_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHHHT STTHHHHHHHHHHHHHHHHHHHHHH SSSS SSTTTGGGT STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS:
ExpBur :eebeeeeeebbebeebbeebbeebeebeeebeeeeebebeebeebeeebeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbbb:
Contact : b bb b bbbbb b b b b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acj_A_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : SSSSS SSS EEE EETTEEEEEEE B B SS SSS EE SSS EETTTT EEE SSS EEE GGGS EE S SS SS :
ExpBur :bbeeeebbbebebbbbbbbbbeebbbbbbbbbeeeeeeeeebbebbbeeebbbebeeeebbbbbeeeebbbebbebeeebeeebbeeeeeeeebebebee:
Contact : b
queryA 1118:TV:1119
:**:
6acj_A_1 1118:TV:1119
SecStr : :
ExpBur :be:
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[assembly_id:1]
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