Protein Model on 6acg_B_1_C_1
(TEMPLATE: 
6acg
)Protein Model on 6acg_B_1_C_1
(TEMPLATE: 6acg
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [1057 aa] | Spike glycoprotein :SPIKE_CVHSA | 42Y 45E 46I 47F 48R 269N 270G 715K 719D 721N 722M 737Q 738Y 739G 740S 741F 744Q 768K 769Q 770M 771Y 772K 832I 833C 834A 835Q 836K 837F 839G 844P 845P 846L 848T 855Y 862G 865T 866A 868W 869T 872A 876L 877Q 878I 879P 882M 886Y 889N 893V 894T 895Q 896N 899Y 900E 902Q 949S 958V 984Q 987Q 1001R 1009T 1013E 1020K (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acg_B_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acg_B_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S B SS EE SSS SSEEEEEEEEE TT EEE SS EE TT EEEEEE SS EEEBSSSSTT BEEEE:
ExpBur :eebebeeeeeeeeeeeebbebebbeeeeeeeeeeeeeeebebbbbebebebbebeeeebbbeebebeebbbbbbbbbbbbbbbbbbbeebeeebebbbbb:
Contact : b bbbb
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acg_B_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr : SSEEEEEEB S EEE SSS TT TT S S EEEEEEE S SSB EEEEEEEEETTEEEEEEE B SSS EEE:
ExpBur :beeebbbbbbbbbebbebebbebeeeeeeeeeebbeeeeeeeeeeeebeeeeeebbeeeeebebbbbbbbbeeeeebbebebeeebeeeeebeebeebbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acg_B_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEEE S EE EEE ---- S EEEEE EEEEEEEEE SSS EEEEEESTT HHHHHHHHHT SS S EE EEB EEE :
ExpBur :eeeebebeeebeebbbbbbbbe----ebebeeebbbbbebeebebbbebbeeeebeebbbbebbbbbebebeeeeeebeebeeeeeebebeeeeebbbbe:
Contact : bb
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6acg_B_1 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr : B THHHHSS S STT EE S B S TTTS SS SS EESSS STTSTT S EEEEEEE SSHHHH SSS TTGGGTT SSS :
ExpBur :eeeeebebeebbeeeebebbbebbeeebeebebebeebeeeeebeeeebeeeeeeebeeebbbbbebbbbbbebebbeebeeeebeebebebbbbeeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************************************************:
6acg_B_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
SecStr : EEEEEE TTTS TT S EE SS SS B TT TTSTT B SEE SS TTTS EEEEEEE SSSS SB S :
ExpBur :bbbbbbbbeeebbeeebbeeeebbebeeeebeeeeeeeeeeebbeeeeeeebeeeebeebbeebebeeeeeebebbbbbbbbbeeeeeeebbbbbeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acg_B_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : BTS EEEE SS EEEEBB B S TT SSSS EEEETTTEEEE B SEE EEEE SSS EEEESS SSHHHHHHHHT BSS:
ExpBur :eebeeebbebbbbeeeeebbbbeeeeeeeeeeebeeeeeeebebbebeeeeebebeeebbebbbbbbbebeeeeeeebbbbeebebeebeebbeeeebeb:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acg_B_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS EE STT EES B SS S SEEETTTEEEE ------------- EEES S SS B SSEE EE EEE EE:
ExpBur :ebeeeeeeebbeebeebbbbebeeeeeeeeeebebeeebbbbe-------------eebbeeeeeeeeeeeeeeeeeebbeebebebeeebebbbbbbbe:
Contact : b
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acg_B_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr :E HHHHS S SHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH SS STT TTTS SSSSS S HHHHHHHHH ------:
ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbebeeeeeeeeeebeeeebebeebbbeeeeeeeebebbbbbeeeeeee------:
Contact : b bb bbbbb b bbbbb
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acg_B_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TTSEEE SS HHHHHHHHHHHHHHHHSS S SSSS SHHHHHHHTTTTT SHHHHTTHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeeebbeeeeeebeeeeebebbbbbbbbbbebbeebeeeebeeeebeebbbebbeebeebeebbeeeeeebbeebbebbeebe:
Contact : bbbbbb b bbb b b b bb bb b bbbb b b b bbbb bb b
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acg_B_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHHHS STTTHHHHHHHHHHHHHHHHHHHHH SSS SSTTTHHHH STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS:
ExpBur :eebeeeeeebbebeebeeebeebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbbb:
Contact : b b b b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acg_B_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : SSSSSSSS SEEEEEEETTEEEEEEE EE B B SSB SSSSB SSS EETTTT EE SSS STTS BSSSSS B :
ExpBur :bbeeeeebbebebbbbbbbbbeebbbbbbbbbeeeeeeeeebbebbbeeebbbebeeeebbbebeeeebbeebeebebebeeeebeeeeeeeeeebebee:
Contact : b
queryA 1118:TV:1119
:**:
6acg_B_1 1118:TV:1119
SecStr : :
ExpBur :ee:
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[assembly_id:1]
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