Protein Model on 6acg_B_1_A_1
(TEMPLATE: 
6acg
)Protein Model on 6acg_B_1_A_1
(TEMPLATE: 6acg
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | A 1 (A) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | 304N 306R 342R 368G 369V 370S 372T 373K 383Y 416F 449R 450P 451F 452E 453R 454D 455I 504L 505N 506A 533T 544R 548F 549Q 550Q 551F 552G 553R 554D 555V 556S 557D 558F 574S 575P 576C 577S 578F 579G 600D 601V 602N 631T 632Q 651P 653G 654A 655G 679M 681L 682G 683A 684D 685S 686S 687I 689Y 690S 691N 693T 694I 695A 929K 939Q 943T 947Q 950S 951N 952F 968K 988T 995I 999E 1020K 1021R 1022V 1024F 1027K 1028G 1029Y 1056N 1061P 1071F 1074E 1075G 1076V 1077F 1089R 1103F 1105S 1110V 1112I (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acg_B_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acg_B_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S B SS EE SSS SSEEEEEEEEE TT EEE SS EE TT EEEEEE SS EEEBSSSSTT BEEEE:
ExpBur :eebebeeeeeeeeeeeebbebebbeeeeeeeeeeeeeeebebbbbebebebbebeeeebbbeebebeebbbbbbbbbbbbbbbbbbbeebeeebebbbbb:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acg_B_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr : SSEEEEEEB S EEE SSS TT TT S S EEEEEEE S SSB EEEEEEEEETTEEEEEEE B SSS EEE:
ExpBur :beeebbbbbbbbbebbebebbebeeeeeeeeeebbeeeeeeeeeeeebeeeeeebbeeeeebebbbbbbbbeeeeebbebebeeebeeeeebeebeebbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acg_B_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEEE S EE EEE ---- S EEEEE EEEEEEEEE SSS EEEEEESTT HHHHHHHHHT SS S EE EEB EEE :
ExpBur :eeeebebeeebeebbbbbbbbe----ebebeeebbbbbebeebebbbebbeeeebeebbbbebbbbbebebeeeeeebeebeeeeeebebeeeeebbbbe:
Contact : b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6acg_B_1 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr : B THHHHSS S STT EE S B S TTTS SS SS EESSS STTSTT S EEEEEEE SSHHHH SSS TTGGGTT SSS :
ExpBur :eeeeebebeebbeeeebebbbebbeeebeebebebeebeeeeebeeeebeeeeeeebeeebbbbbebbbbbbebebbeebeeeebeebebebbbbeeeeb:
Contact : b bbb bb b b
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************************************************:
6acg_B_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
SecStr : EEEEEE TTTS TT S EE SS SS B TT TTSTT B SEE SS TTTS EEEEEEE SSSS SB S :
ExpBur :bbbbbbbbeeebbeeebbeeeebbebeeeebeeeeeeeeeeebbeeeeeeebeeeebeebbeebebeeeeeebebbbbbbbbbeeeeeeebbbbbeeeee:
Contact : bbbbbbb bbb
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acg_B_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : BTS EEEE SS EEEEBB B S TT SSSS EEEETTTEEEE B SEE EEEE SSS EEEESS SSHHHHHHHHT BSS:
ExpBur :eebeeebbebbbbeeeeebbbbeeeeeeeeeeebeeeeeeebebbebeeeeebebeeebbebbbbbbbebeeeeeeebbbbeebebeebeebbeeeebeb:
Contact : b b bbbbbbbbbbb bbbbbb bbb
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acg_B_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS EE STT EES B SS S SEEETTTEEEE ------------- EEES S SS B SSEE EE EEE EE:
ExpBur :ebeeeeeeebbeebeebbbbebeeeeeeeeeebebeeebbbbe-------------eebbeeeeeeeeeeeeeeeeeebbeebebebeeebebbbbbbbe:
Contact : bb b bbb b bbbbbbb bbb bbb
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acg_B_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr :E HHHHS S SHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH SS STT TTTS SSSSS S HHHHHHHHH ------:
ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbebeeeeeeeeeebeeeebebeebbbeeeeeeeebebbbbbeeeeeee------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acg_B_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TTSEEE SS HHHHHHHHHHHHHHHHSS S SSSS SHHHHHHHTTTTT SHHHHTTHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeeebbeeeeeebeeeeebebbbbbbbbbbebbeebeeeebeeeebeebbbebbeebeebeebbeeeeeebbeebbebbeebe:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acg_B_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHHHS STTTHHHHHHHHHHHHHHHHHHHHH SSS SSTTTHHHH STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS:
ExpBur :eebeeeeeebbebeebeeebeebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbbb:
Contact : b b b b bbb b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acg_B_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : SSSSSSSS SEEEEEEETTEEEEEEE EE B B SSB SSSSB SSS EETTTT EE SSS STTS BSSSSS B :
ExpBur :bbeeeeebbebebbbbbbbbbeebbbbbbbbbeeeeeeeeebbebbbeeebbbebeeeebbbebeeeebbeebeebebebeeeebeeeeeeeeeebebee:
Contact : bbb b bbb b b b bbbb b b b b b
queryA 1118:TV:1119
:**:
6acg_B_1 1118:TV:1119
SecStr : :
ExpBur :ee:
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[assembly_id:1]
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