Protein Model on 6acg_A_1_C_1
(TEMPLATE: 
6acg
)Protein Model on 6acg_A_1_C_1
(TEMPLATE: 6acg
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [1057 aa] | Spike glycoprotein :SPIKE_CVHSA | 304N 306R 342R 370S 372T 373K 383Y 449R 450P 451F 452E 453R 454D 455I 456S 459P 502E 504L 505N 506A 544R 545F 549Q 550Q 552G 553R 556S 558F 575P 576C 577S 578F 599Q 600D 602N 633A 651P 653G 654A 655G 681L 682G 683A 684D 685S 686S 687I 688A 689Y 690S 691N 693T 694I 695A 939Q 943T 947Q 950S 951N 952F 953G 984Q 988T 995I 999E 1021R 1022V 1023D 1024F 1027K 1029Y 1061P 1071F 1074E 1075G 1076V 1089R 1103F 1105S 1110V (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acg_A_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acg_A_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S EEEESS EE SS SEEEEEEEEE TTEEEEE BTTB EE SSEEEEE SS S EEEESSSSTTSEEEEEE:
ExpBur :eebeeeeeeeeeeeeeebeebebbeeeeeeeeeebeeeebebbebebebebeebeeeebbbeebebeebbbbbbbbbbbbbbbbbbbeeeeeebebbbbb:
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acg_A_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr :ESSSEEEEEEEE SS EEE SSS TT S EEEEEEE SS EEEEEEEETTEEEEEE SSS EEE:
ExpBur :beeebbbbebbbbebbebbbbbbeeeeeebeeeebeeeeeeeeeeeebeeeebebeeeeeebeebbbbbbbeeebebbbbebebebeeeeeeeebeebbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acg_A_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEE S EEEE EEE ---- S EEEE EEEEEEEEE SS EEEEEESTT HHHHHHHHHT SS SS EEEEEEEB EEE :
ExpBur :eeeebeeeeeeeebbbbbbbbe----ebbbeebbbbebebeebebbbebbeeeebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbe:
Contact : b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6acg_A_1 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr : B THHHHSS S STT EE S B HHHHS SS SEEEESSS SGGGTT B SEEEEEEEE SSHHHHSSSS STTTSS SS :
ExpBur :eeeeebebeebbeeeebebbbebeeeebeebebebebbeeeeebeeeebeeeeeeebeeebbbebbbbbbbbbbebeeebeeeeeeebbbebbebbeeeb:
Contact : b b bb b
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************************************************:
6acg_A_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
SecStr : EEEEEE TTTS TT TT EEE SS TT S B TTS TTSTT B EEE SS STTS EEEEEEE TT SS BB S :
ExpBur :bbbbbbbbeeebeeeebbeeeebbeeeeeebeeebeeeeeeebbeeeeebebeeeebeebeeebebeeebeeeebbbbbbbbbbeeeeeebbbbbeeeee:
Contact : bbbbbbbb b b bbb
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acg_A_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : SS EEEE SS EEEEEEEE S TT SS EEEETTTEEEEEE SEEEEEEE SSS EEEESS SHHHHHHHHHT BSS:
ExpBur :eeeeeebbebbbbeeeeebebeeeeeebeeeebbeeeeeeebebbebeeeeebebeeeeeebbbbbbbebeeeeeebbbbbeebebeebeebbeeeebee:
Contact : bb bb bb b b bbbb bb b
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acg_A_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS B STT EES B S SB TTT EEE ------------- EEE S SS B SSEE EEE EE:
ExpBur :ebeeeeeebbbeebeebbbeebeeeeeeeebebebeeebbbee-------------eebbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbbbbe:
Contact : b b bbb bbbbbbbbbbb bbb
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acg_A_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr :E HHHHS S SHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH SS EETTEE TTTS SSSS S HHHHHHHHT ------:
ExpBur :bebeebbbeeeeebeebeeeeeeebeebeeebeebbeebeebbeebbeeeeeeeeeeeeeeeebbebeebbbeeeeeeeebebbbbbeeeeeee------:
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acg_A_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TT EEE SS HHHHHHHHHHHHHHHHSS S SSSS SHHHHHHTTTTTT SHHHHHTHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeebebeeeeeebeeeebbeebbbbbbbbeebbeebeeeeeeeeebeebbbebbeebebeeeebeebeeebbebbbebbeebe:
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acg_A_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHHHS STTTHHHHHHHHHHHHHHHHHHHHT SSS SSTTHHHHH STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS:
ExpBur :eebeeeeeebbebeebeeebeeeeeebeeebeeeeebebeeeeebeeeeeeeebbeebeebbebbbeebeebbeebeeebeebeebbeebbebbeebbeb:
Contact : b b b bbbb b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acg_A_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : STTTSSSS S EEEEETTEEEEE EE B BSSB SSSS EE SS EETTTT EE SSS B TTTSEE SSS B :
ExpBur :bbeeeeebbebebbbbbbbbbeebbbbbbbbbebeeeeeeebbebbbeeeebbebeeeebbbebeeeebbeebbebeeebbeeebeebeeeeeeebebee:
Contact : bbbb b b b b bbb b b b b
queryA 1118:TV:1119
:**:
6acg_A_1 1118:TV:1119
SecStr : :
ExpBur :be:
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[assembly_id:1]
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