Protein Model on 6acd_C_1_A_1
(TEMPLATE: 
6acd
)Protein Model on 6acd_C_1_A_1
(TEMPLATE: 6acd
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | C 1 (C) | polymer(polypeptide(L)) [1057 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | A 1 (A) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | 42Y 45E 46I 47F 48R 110K 112Q 160T 189N 191D 192G 193F 218P 221K 223P 225G 226I 227N 228I 269N 719D 721N 722M 727D 737Q 738Y 739G 740S 741F 744Q 758R 761R 768K 769Q 770M 771Y 772K 779F 832I 833C 834A 835Q 836K 837F 838N 839G 844P 845P 846L 848T 851M 855Y 865T 868W 869T 872A 876L 877Q 878I 879P 880F 882M 886Y 889N 893V 894T 895Q 896N 899Y 900E 945V 948L 949S 960N 963L 964S 965R 966L 967D 984Q 987Q 991T 1009T 1012S 1013E 1016L 1021R (identity: 100.0 %/95.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acd_C_1 identity=95.9% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acd_C_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S EEEE TT B S S SEEEEEEEEE TT EEEEEEE SS EE S EEEEEEESSS EEEESS STT EEEEEE:
ExpBur :eebeeeeeeeeeeeebebeebbbbeebeeeeeeeeeebeebbbbbebebebbebeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb:
Contact : b bbbb b b
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acd_C_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr :E SSSEEEEEEE S EE SSS S EEEEEEEE S SS EEEEEEEEEETTEEEEEEEE SSS BE:
ExpBur :beeebbbbebbbbeebebebbebeeeebebebebbeeeeeeeeeeeeeeeeebebeeeeeebebbbbbbbbeeeeebbbbebeeebeeeeebeeeebbbe:
Contact : b b bbb
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acd_C_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEEE SEEEE EE ---- SEEEEEEE EEEEEEEEE SSS EEEEEESSS HHHHHHHHHT SS SS EEEEEEEB EEEE :
ExpBur :eeeebeeeeebeebebbbbbbe----ebbbbebbbbbbebeebebbbebbeeeebeebbbbbbebbbbbebeeeeeebeebeeebeebebeeebebebee:
Contact :b b b bbbb b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:* ***********************************************************************************************:
6acd_C_1 318:NXXXXCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr : ---- HHHHS S STT EEEEE S TTTS SS SEEEESSS SGGGTT BSSEEEEEEEE GGGGGGSSSS SSHHHHT SSS :
ExpBur :e----eebeebbeeeebebbbbbeeeebeebebebeebeeeeebebeebeeeebeebeeebbbbbbbbbbbbebebbebbbeeeeeebbbebbbbbeeeb:
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:*********************************************************************************************** *:
6acd_C_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGXXXXT: 517
SecStr : EEEEEE TTTS SS S EEE SS TT TTS TTSTT SEEE TTS STTS EEEEEEE SSSS SB ---- :
ExpBur :bbbbbbebeeebbeeeeeeebeebebeeeebeeeeebeeeeebbeeeeeeeeeeeebeebbeebebeeeeeeeebbbbbbbbbbeeeeeeebbbe----e:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acd_C_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : SS EEEE SS EEEEEEEE TT B SSS EEEEETTTEEEEEE EEEEEEE S SSS EEE SS SHHHHHHHHTT BSS:
ExpBur :eeeeeebbebebeebeeebebeeeeeebeeeeeebeeeeeeeebbebeeeeebebeeebbebbbbbbbbbbeeeeebbbbbeebebeebeebbeeeebeb:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acd_C_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS S EE SSS EES B SS SEEETTTEEE ------------- BEE SS B B EEEEEEE EE:
ExpBur :ebeeeeeeeebeeeeebbbbbbeeeeeeeeeebebeeebbbbe-------------ebbbeeeeeeeeeeeeeeeeeebebebebebeebbbbbbbbbbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acd_C_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr :E TTTSSS S SSHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHT SS S STT TTTS SSSSSSS HHHHHHHHHS ------:
ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbeeeeeeeeeeeebeeebbebeebbbeeeeeeeebebbbbbeeebeee------:
Contact : b bb b bbbbb b b b bbbbb b
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acd_C_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TTSEEE SS HHHHHHHHHHHHHHHHSS S SSSS SHHHHHHHTTTTT SHHHHTTHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeebbbeeeeeebeeeebbebbbbbbbbbbebbeebeeeebeeeebeebbbebbeebebeeebbeeeeeebbeebbebbeebb:
Contact : bbbbbbbb bbb b b b b bb b bbbbb b b b bbbb bb
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acd_C_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHHHS STTHHHHHHHHHHHHHHHHHHHHHHS SSSSSSTTTTTTS STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS:
ExpBur :eebeeeeeebbebeebbeebbeebeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbeb:
Contact : b bb b bbbbb b b b b bb b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acd_C_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : STTTS SS EEEEEEETTEEEEEEE B B S SSSSEEE SS EETTTT EE SSS EE STT EEESSSSS :
ExpBur :bbeeeebbbebebbbbbbbbbeebbbbbbbbbeeeeeeeeebbebbbeeeebbebeeeebbbbbeeeebbeebbebeeebeeebbeebeeeeeeebebee:
Contact : b
queryA 1118:TV:1119
:**:
6acd_C_1 1118:TV:1119
SecStr : :
ExpBur :be:
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[assembly_id:1]
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