Protein Model on 6acd_B_1_C_1
(TEMPLATE: 
6acd
)Protein Model on 6acd_B_1_C_1
(TEMPLATE: 6acd
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | B 1 (B) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [1057 aa] | Spike glycoprotein :SPIKE_CVHSA | 42Y 45E 46I 47F 48R 49S 51T 218P 269N 400G 401Q 719D 721N 722M 737Q 738Y 739G 740S 741F 744Q 761R 768K 769Q 770M 771Y 772K 779F 832I 833C 834A 835Q 836K 837F 838N 839G 844P 845P 846L 847L 848T 851M 855Y 864A 865T 868W 869T 872A 876L 877Q 878I 879P 880F 882M 886Y 889N 893V 894T 895Q 896N 899Y 945V 949S 984Q 987Q 991T 994L 998A 1001R 1009T 1012S 1013E 1021R (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acd_B_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acd_B_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S S EEEE TT SS S EEEEEEEE TT EEEEE TT EE S EEEEEEESS TT EEEESSSSTTSEEEEEE:
ExpBur :eebeeeeeeeeeeeebebeebbbbebeeeeeeeeeeebebbbbbbebebebbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbeebeeebebbbbb:
Contact : b bbbbb b
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acd_B_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr :E SS EEEEEEE S EE TTT BTT S EEEEEEEE S SSB EEEEEEEEEETTEEEEEEE B SSS S E:
ExpBur :beeebbbbbbbbbebbebebbebeeeebeeeeebbeeeeeeeeeeeebeeeebebeeeeeebeebbbbbbbeeeeebbbbebeeebeeeeebbeeebbbe:
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acd_B_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEEE EEEE EE ---- S EEEEEE EEEEEEEEE SSS EEEEEESSS HHHHHHHHHT SS SS EEEEEEEB :
ExpBur :eeeebebebebeebbbbbbbbe----ebbbbebbbbbbebeebebbbebbeeeebeebbbbbbebbbebebeeeeeebeebeeebeebebeeeeebbbbe:
Contact :b b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6acd_B_1 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr : B THHHHHS S STT EEEEE S B SSTTTS S SEEEESSS STTGGGS BSSEEEEEEEE SSTTTT SSS TTHHHHT SS :
ExpBur :eeeeebebeebbeeeebbbbeebeeeebeebebebeebeeeeebeeeebeeeeeeebeeebbbbbebbbbbbebebeebbeeeeeeebbbebbebeeeeb:
Contact : bb
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************************************************:
6acd_B_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
SecStr : EEEEEE TTTT TT BTT EE SS SS TTS TTSTT SEE B SSS GGGS EEEEEEE TTSSS BB S :
ExpBur :bbbbbbebeeeebeeeebeebebbebeeeebeeebeeeeeeebbeeeeeeebeeeebeebeeebebeeeeeeeebbbbbbbbbbeebeeebbbbbeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acd_B_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : BTS EEEE SS EEEEEEEE SS SSS EEEETTTEEEEEE SEEEEEEE SSS EEE SS SSHHHHHHTTT BSS:
ExpBur :eeeeeebbebbbbeeeeebbbeeeeeebeeeebeeeeeeeeeebbebeeeeebebeeebbebbbbbbbbbeeeeeebbbbbeebebeebeebbeeeebeb:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acd_B_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS S EE SSS EES B SS S EE SSS EE ------------- BEE S SS B SEE EEEEEEE EE:
ExpBur :ebeeeeeeeebeeeeebbbbebeeeeeeeeeebebeeebbbbe-------------ebbbeeeeeeeeeeeeeeeeeebbeebebebeeebbbbbbbbbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acd_B_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr :E TTTSSS SSSSHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHHTT SS S SSS TTTS SSSS SS HHHHHHHHHS ------:
ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbebbeeebeee------:
Contact : b bb bbbbb b b bbbbb b
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acd_B_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TTSEEE SS HHHHHHHHHHHHHHHHSS S SSSS SHHHHHHTTTTTT THHHHTSHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeeeeebbeebbebbeebe:
Contact : bbbbbbbb bbbbb b b bb bb b bbbbb b b b bbbb b
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acd_B_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHHHS STTHHHHHHHHHHHHHHHHHHHHHHS SSSS SSTTTTTTT SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS:
ExpBur :eebeeeeeebeebeebbeebbebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbeb:
Contact : b b b b b b b b b bb
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acd_B_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : TTTS SS EEEEEE SSEEEEEEE EE B B S BSSSSB SS EETTTT EE SSS EE STTS BS SSS SS :
ExpBur :bbeeeebbbebebbbbbbbbbbebbbbbbbbbeeeeeeeeebbebbbeeeebbebeeeebbbbbeeeebbeebbebeeebeeebbeeeeeeeebebebee:
Contact : b
queryA 1118:TV:1119
:**:
6acd_B_1 1118:TV:1119
SecStr : :
ExpBur :be:
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[assembly_id:1]
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