Protein Model on 6acd_A_1_B_1
(TEMPLATE: 
6acd
)Protein Model on 6acd_A_1_B_1
(TEMPLATE: 6acd
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [1065 aa] | Spike glycoprotein :SPIKE_CVHSA | 42Y 44D 45E 46I 47F 48R 110K 112Q 160T 189N 191D 192G 193F 218P 221K 223P 225G 226I 227N 228I 269N 400G 401Q 719D 721N 722M 737Q 738Y 739G 740S 741F 744Q 761R 768K 769Q 770M 771Y 772K 779F 832I 833C 834A 835Q 836K 837F 838N 839G 844P 845P 846L 847L 848T 851M 855Y 864A 865T 868W 869T 872A 876L 877Q 878I 879P 880F 882M 886Y 889N 893V 894T 895Q 896N 899Y 900E 945V 948L 949S 957S 960N 963L 964S 965R 966L 967D 984Q 987Q 994L 1001R 1009T 1013E 1016L 1021R 1100D (identity: 100.0 %/96.6 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6acd_A_1 identity=96.6% |
queryA 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
:****************************************************************************************************:
6acd_A_1 18:RCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIII: 117
SecStr : S S EEE TT SSS S EEEEEEEE SS EEEEE TT EE S EEEEEEESSS EEEESSSSTTSEEEEEE:
ExpBur :eebeeeeeeeeeeeebebbebbbbeeeeeeeeeeeeebeeebbbbebebebbbbeeebbbbeebebeebbbbbbbbbbbbbbbbbbbbebeeebebbbbb:
Contact : b bbbbb b b
queryA 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
:****************************************************************************************************:
6acd_A_1 118:NNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLK: 217
SecStr :E SSSEEEEEEE S EEE SSS S EEEEEEEE S SSB EEEEEEEEEETTEEEEEEEE B SSS S E:
ExpBur :beeebbbbbbbbbeebebebbebeeeebebeeebbeeeeeeeeeeeebeeeebebeeeeeebebbbbbbbbeeeeebbbbebeeebeeeeebbeeebbbe:
Contact : b b bbb
queryA 218:PIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
:********************** **************************************************************************:
6acd_A_1 218:PIFKLPLGINITNFRAILTAFSXXXXIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFP: 317
SecStr :EEEEE EEEE EEE ---- S EEEEEE EEEEEEEEE SSS EEEEEESSS HHHHHHHHHT SS SEEEEEEEEEB EEEE :
ExpBur :eeeebeeeeebeebebbbbbbe----ebbbbebbbbbbebeebebbbebbeeeebeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbb:
Contact :b b b bbbb b
queryA 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
:****************************************************************************************************:
6acd_A_1 318:NITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFM: 417
SecStr :S B THHHHSS S STT EEEEE SEE TTTS S SEEEESSS SGGGGGS BSSEEEEEEEE SSTTTT SSS SHHHHT SSS :
ExpBur :eeeeebebeebbeeeebebbbebeeeebeebebebeebeeeeeeeeeebeeeeeeebeeebbbbbbbbbbbbebebeebbbeeeeeebbbebbebbeeeb:
Contact : bb
queryA 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
:****************************************************************************************************:
6acd_A_1 418:GCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLST: 517
SecStr : EEEEEE TTTT SS BTT EEE SS TT S B TTS TTSTT B EEE B SSS GGG EEEEEEE TTSSS EE S :
ExpBur :bbbbbbbbeeeebeeebbeebebbeeeeeebeeebeeeeeeebbeeeeeeebeeeebeebeeebebeeeeeeeebbbbbbbbbbeeeeeebbbbbeeeee:
queryA 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
:****************************************************************************************************:
6acd_A_1 518:DLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTP: 617
SecStr : BSS EEEE SS EEEEEEEE TT SSS EEEETTTEEEEEE SEEEEEEEES SSS S EEE S SSHHHHHHHTT BSS:
ExpBur :eeeeeebbebbbbeeeeebbbeebeeebeeeebeeeeeeeeeebbebeeeeebebeeebbebbbbbbbbbbeeeeebbbbbeebebeebeebbeeeebeb:
queryA 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
:******************************************* ********************************************:
6acd_A_1 618:AWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTS: 717
SecStr : SS EE SSS EES EEESS S SEE SSS EE ------------- EEE S SS B SSEE EEEEEEE EE:
ExpBur :ebeeeeeeeebeeeeebbbbebeeeeeeeebebebeeebbbbe-------------ebbbeeeeeeeeeeeeeeeeeebbeebebebeebbbbbbbbbbe:
queryA 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMK: 817
:********************************************************************************************** :
6acd_A_1 718:VDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLAXXXXXX: 817
SecStr :E TTTSSS S SSHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHH SS S EETTEE TTTS SSSSSSS HHHHHHHHHS ------:
ExpBur :bebeebbbeeeeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeeeeeeeebeeebbebeebbbeeeeeeeebebbbbbeeebeee------:
Contact : b bb bbbbb b b bbbbb b
queryA 818:QYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
: **************************************************************************************:
6acd_A_1 818:XXXXXXXXXXXXXXICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQ: 917
SecStr :-------------- TTSEEE SS HHHHHHHHHHHHHHHHSS S SSSS SHHHHHHHTTTTT THHHHTTHHHHHHHHHHHHHHHH:
ExpBur :--------------eeeeeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebeebbbebbeebebeeebbeeebeebbeebbebbeebb:
Contact : bbbbbbbb bbbbb b b bb bb b bbbbb b b b bbbb bb
queryA 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
:****************************************************************************************************:
6acd_A_1 918:ESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLG:1017
SecStr :HHHHS STTHHHHHHHHHHHHHHHHHHHHHHS SSSSSSSTTTTTTT STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS:
ExpBur :eebeeeeeebeebeebbeebbebeeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeebbeebbebbeebbeb:
Contact : b bb b b bbbbb b b b b b b b
queryA 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
:****************************************************************************************************:
6acd_A_1 1018:QSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINN:1117
SecStr : STTTSSSS EEEEEE SSEEEEEEE EE B B S BSSSSEEE SS EETTTT EE SSS STT EEES TTS SS :
ExpBur :bbeeeebbbebebbbbbbbbbbebbbbbbbbbebeeeeeeebbebbbeeeebbebeeeebbbbbeeeebbeebbebeeebeeeebeeeeeeeebebebee:
Contact : b b
queryA 1118:TV:1119
:**:
6acd_A_1 1118:TV:1119
SecStr : :
ExpBur :be:
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[assembly_id:1]
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