Protein Model on 5xlr_A_1_C_1
(TEMPLATE: 
5xlr
)Protein Model on 5xlr_A_1_C_1
(TEMPLATE: 5xlr
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1022 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | C 1 (C) | polymer(polypeptide(L)) [1022 aa] | Spike glycoprotein :SPIKE_CVHSA | 289S 301Q 304N 306R 368G 369V 370S 373K 450P 451F 452E 456S 502E 503L 505N 533T 545F 548F 549Q 551F 552G 553R 554D 555V 556S 557D 558F 574S 575P 578F 600D 601V 632Q 651P 652I 653G 654A 655G 680S 681L 683A 684D 685S 687I 689Y 693T 694I 695A 943T 947Q 950S 951N 952F 984Q 988T 1021R 1022V 1023D 1027K 1028G 1029Y 1051P 1054E 1056N 1059T 1061P 1071F 1073R 1076V 1077F 1089R 1103F 1105S 1108C 1109D 1110V 1111V (identity: 100.0 %/93.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5xlr_A_1 identity=93.9% |
queryA 33:HTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFEL: 132
:*************************************** ******************************************************* :
5xlr_A_1 33:HTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTXXXXXGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFEX: 132
SecStr : EEE SS SEEEEESS TTEEEEE ----- S SSEEEEE TT EEEEESS SSSS EEEEEESSSSEEEES -:
ExpBur :ebebeebbbbebeeeeeeeeeebeebbbbbeeebeeeee-----eeeeebebebbbbbbbeeeeebebbbbbeeeeeeeebbbbeeeeeebbbebbbbe-:
queryA 133:CDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFR: 232
: ******************* *****************************************************:
5xlr_A_1 133:XXXXXXXXXXXXXXXXHTMIFDNAFNCTFEYISDAXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFR: 232
SecStr :---------------- STTS SS EEE ------------ EEEEEEEETTEEEEEEEE SSS S EE B EE:
ExpBur :----------------eeebeeeeeeeeeeeeeee------------ebbebbbbbeeeeebbbbebebeeebeeeeeebebebebeeeeebeeeebebb:
queryA 233:AILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNAT: 332
:****** ************************************************************************************:
5xlr_A_1 233:AILTAFXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNAT: 332
SecStr :EEE ---------- EEEEE EEEEE GGG EE SSS HHHHHHHHHT SS EEEEEEEEEB EEEEE S TTHHHHS S:
ExpBur :bbeeee----------eebbbbbebeeebbbbbbeeeebbeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbeeeeeebebeebbeee:
Contact : b b b b
queryA 333:KFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATS: 432
:****************************************************************************************************:
5xlr_A_1 333:KFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATS: 432
SecStr : STT EEEEE S TTTS TT SEEEESSS SSS TT BEEEEEEEEEE GGGGGGSSSS SHHHHT SS EEEEEE TTTS S:
ExpBur :ebebbebbeeeebeebbbebeebeeeeebebeeeeeeebeebeeebbbbbbbbbbbbebebbebbbeeeeeebbbebbbbbeeebbbbbbbebeeebbee:
Contact : bbb b
queryA 433:TGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGL: 532
:****************************************************************************************************:
5xlr_A_1 433:TGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGL: 532
SecStr :S EEE SS TT TTS TTSTT SEEE TTS STTS EEEEEEEEE SSSS B S SSEEEEEETTE:
ExpBur :eeeeebeebbbeeeebeeeeebeeeeebbeeeeebeeeeeebeebbeebebeeeeeeeebbbbbbbbbbeeeeeebbbbbeeeeeeeeeeebbebebbeb:
Contact : bbb b bb b
queryA 533:TGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ: 632
:****************************************************************************************************:
5xlr_A_1 533:TGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ: 632
SecStr :EEEEEEEE TTS SEE TT EEE TTS EEEEESSS EEEEEEEES SSS S EEEE S SHHHHHHHTTT BTT SS B SS:
ExpBur :eeebbbeeeeeeeeeeebeeeeeeeeeebbebeeeeebebeeebbebbbbbbbebeeeeeebbbbbeebebeebeebbeeeebebebeeeeeeeebeeee:
Contact :b b bb bbbbbbbb bb b bb b
queryA 633:AGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECA: 732
:**************************** **********************************************************:
5xlr_A_1 633:AGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXXVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECA: 732
SecStr :SSEEES B SS SEEETTTEEE -------------- EES SS EEE S EEEEEEEEEE EEE TTTTTTTT SHHH:
ExpBur :bbbbbebeeeeeeeeeebebeeebbbbe--------------ebbeeeeeeeeeeeeeeeebebbeebebebeeebbbbbbebbebebeebbbeebeebe:
Contact : bbbbb bb bbb b b bbb
queryA 733:NLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLI: 832
:******************************************************************************************* *:
5xlr_A_1 733:NLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLXXXXXXXXI: 832
SecStr :HHHHHH SHHHHHHHHHHHHHHHHHHHHHHHH SS S BSSSSB TTTS TTTT SS HHHHHHHHHHHTT HHHH -------- :
ExpBur :ebbeeeeebbeebeeebeebbeebbebbeebbeeeeeeeeeeeebebeebebbebbbeeeeeeeebebbebbbebbeeeeeeeeeeebeee--------e:
queryA 833:CAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQD: 932
:****************************************************************************************************:
5xlr_A_1 833:CAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQD: 932
SecStr : SSSEEE SS HHHHHHHHHHHHHHHHSS S TTSS HHHHHHHHHHHHT THHHHHTHHHHHHHHHHHHHHHHHHTTS SSTTHHHHH:
ExpBur :eeeeebbbebeeeebeeeebbeebbbbbbbbbebbebbeeebeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebeeebeeeeeebbebbe:
queryA 933:VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM:1032
:****************************************************************************************************:
5xlr_A_1 933:VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM:1032
SecStr :HHHHHHHHHHHHHHHHS SSS S TTTHHHHS SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTTSSSSB :
ExpBur :beeebeeebeebbeebeeeeeeeebebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeeebeebbebbeebbbbebeeeeebbeeebbb:
Contact : b b bbb b b bbb bbb
queryA 1033:SFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVY:1120
:****************************************************************************************:
5xlr_A_1 1033:SFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVY:1120
SecStr :EEEEEETTEEEEEEEEEE EEEB EESSS EE TTS EEEBSSS EEE SSS B GGG EES SSS :
ExpBur :bbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebeebeebeebbbeebeebbeebbeeeeebeeeebeeeeeeeeeeeebeeeee:
Contact : b b b b b b b bb b b b bbbb
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