Protein Model on 5xlr_A_1_B_1
(TEMPLATE: 
5xlr
)Protein Model on 5xlr_A_1_B_1
(TEMPLATE: 5xlr
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(SPIKE_SARS) | A 1 (A) | polymer(polypeptide(L)) [1022 aa] | Spike glycoprotein :SPIKE_CVHSA | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [1022 aa] | Spike glycoprotein :SPIKE_CVHSA | 42Y 45E 46I 47F 48R 110K 191D 192G 193F 228I 270G 719D 721N 722M 727D 737Q 738Y 739G 740S 741F 744Q 747R 750S 769Q 770M 771Y 772K 818Q 835Q 836K 837F 839G 841T 843L 844P 845P 846L 848T 855Y 868W 869T 871G 872A 875A 876L 877Q 878I 879P 882M 886Y 889N 894T 896N 899Y 900E 945V 948L 949S 960N 964S 965R 966L 967D 984Q 987Q 1001R 1012S 1013E 1016L (identity: 100.0 %/93.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5xlr_A_1 identity=93.9% |
queryA 33:HTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFEL: 132
:*************************************** ******************************************************* :
5xlr_A_1 33:HTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTXXXXXGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFEX: 132
SecStr : EEE SS SEEEEESS TTEEEEE ----- S SSEEEEE TT EEEEESS SSSS EEEEEESSSSEEEES -:
ExpBur :ebebeebbbbebeeeeeeeeeebeebbbbbeeebeeeee-----eeeeebebebbbbbbbeeeeebebbbbbeeeeeeeebbbbeeeeeebbbebbbbe-:
Contact : b bbbb b
queryA 133:CDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFR: 232
: ******************* *****************************************************:
5xlr_A_1 133:XXXXXXXXXXXXXXXXHTMIFDNAFNCTFEYISDAXXXXXXXXXXXXKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFR: 232
SecStr :---------------- STTS SS EEE ------------ EEEEEEEETTEEEEEEEE SSS S EE B EE:
ExpBur :----------------eeebeeeeeeeeeeeeeee------------ebbebbbbbeeeeebbbbebebeeebeeeeeebebebebeeeeebeeeebebb:
Contact : bbb b
queryA 233:AILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNAT: 332
:****** ************************************************************************************:
5xlr_A_1 233:AILTAFXXXXXXXXXXAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNAT: 332
SecStr :EEE ---------- EEEEE EEEEE GGG EE SSS HHHHHHHHHT SS EEEEEEEEEB EEEEE S TTHHHHS S:
ExpBur :bbeeee----------eebbbbbebeeebbbbbbeeeebbeebbbbebebbbbbebeeeeeebeebeeebeebebeeeeebbbbeeeeeebebeebbeee:
Contact : b
queryA 333:KFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATS: 432
:****************************************************************************************************:
5xlr_A_1 333:KFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATS: 432
SecStr : STT EEEEE S TTTS TT SEEEESSS SSS TT BEEEEEEEEEE GGGGGGSSSS SHHHHT SS EEEEEE TTTS S:
ExpBur :ebebbebbeeeebeebbbebeebeeeeebebeeeeeeebeebeeebbbbbbbbbbbbebebbebbbeeeeeebbbebbbbbeeebbbbbbbebeeebbee:
queryA 433:TGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGL: 532
:****************************************************************************************************:
5xlr_A_1 433:TGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGL: 532
SecStr :S EEE SS TT TTS TTSTT SEEE TTS STTS EEEEEEEEE SSSS B S SSEEEEEETTE:
ExpBur :eeeeebeebbbeeeebeeeeebeeeeebbeeeeebeeeeeebeebbeebebeeeeeeeebbbbbbbbbbeeeeeebbbbbeeeeeeeeeeebbebebbeb:
queryA 533:TGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ: 632
:****************************************************************************************************:
5xlr_A_1 533:TGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQ: 632
SecStr :EEEEEEEE TTS SEE TT EEE TTS EEEEESSS EEEEEEEES SSS S EEEE S SHHHHHHHTTT BTT SS B SS:
ExpBur :eeebbbeeeeeeeeeeebeeeeeeeeeebbebeeeeebebeeebbebbbbbbbebeeeeeebbbbbeebebeebeebbeeeebebebeeeeeeeebeeee:
queryA 633:AGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECA: 732
:**************************** **********************************************************:
5xlr_A_1 633:AGCLIGAEHVDTSYECDIPIGAGICASYXXXXXXXXXXXXXXVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECA: 732
SecStr :SSEEES B SS SEEETTTEEE -------------- EES SS EEE S EEEEEEEEEE EEE TTTTTTTT SHHH:
ExpBur :bbbbbebeeeeeeeeeebebeeebbbbe--------------ebbeeeeeeeeeeeeeeeebebbeebebebeeebbbbbbebbebebeebbbeebeebe:
Contact : b bb b
queryA 733:NLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLI: 832
:******************************************************************************************* *:
5xlr_A_1 733:NLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLXXXXXXXXI: 832
SecStr :HHHHHH SHHHHHHHHHHHHHHHHHHHHHHHH SS S BSSSSB TTTS TTTT SS HHHHHHHHHHHTT HHHH -------- :
ExpBur :ebbeeeeebbeebeeebeebbeebbebbeebbeeeeeeeeeeeebebeebebbebbbeeeeeeeebebbebbbebbeeeeeeeeeeebeee--------e:
Contact : bbbbb b b b bbbb b
queryA 833:CAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQD: 932
:****************************************************************************************************:
5xlr_A_1 833:CAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQD: 932
SecStr : SSSEEE SS HHHHHHHHHHHHHHHHSS S TTSS HHHHHHHHHHHHT THHHHHTHHHHHHHHHHHHHHHHHHTTS SSTTHHHHH:
ExpBur :eeeeebbbebeeeebeeeebbeebbbbbbbbbebbebbeeebeeeeebeebbbebbeebebeeebbeeeeeebbeebeebbeebeeebeeeeeebbebbe:
Contact : bbb b b bbbb b b bb bb bbbbb b b b b b bb
queryA 933:VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM:1032
:****************************************************************************************************:
5xlr_A_1 933:VVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLM:1032
SecStr :HHHHHHHHHHHHHHHHS SSS S TTTHHHHS SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS STTTSSSSB :
ExpBur :beeebeeebeebbeebeeeeeeeebebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeeebeebbebbeebbbbebeeeeebbeeebbb:
Contact : b bb b bbbb b b b bb b
queryA 1033:SFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVY:1120
:****************************************************************************************:
5xlr_A_1 1033:SFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVY:1120
SecStr :EEEEEETTEEEEEEEEEE EEEB EESSS EE TTS EEEBSSS EEE SSS B GGG EES SSS :
ExpBur :bbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebeebeebeebbbeebeebbeebbeeeeebeeeebeeeeeeeeeeeebeeeee:
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[assembly_id:1]
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