#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [1072 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | L 1 (G) | polymer(polypeptide(L)) [120 aa] | heavy chain of P17 Fab | 455L 470T 471E 481N 482G 483V 484E 489Y 490F 492L 493Q (identity: 100.0 %/94.5 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7cwn_A_1 identity=94.5% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :****************************************************************************************************: 7cwn_A_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : S EEEESS EE S S EEEEEEEE SSEEEEEEEEEEE SSS EEE EE S EEEEE SS EEEE BSSSSSS: ExpBur :eeeeeeeeeeeeeeebebebbbbbebeeeeeeeeeeeeeebbbbbeeebbbbbbbeeeeeeeeeebebeebebeebbbbbbebeeebbbbbbbbeebbee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7cwn_A_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEE SS B EEEEEEE SS EEEEE SSTT EEEEGGGTEEEEEEEEEE BS SS SSSS TTEEEEEEEEETTEEEEEEEEE SS: ExpBur :bebbbbbbeeeebbbebbebebbebbbbbbeeeeeeeeeebbeeebbeeeeeeeeeeeeebbbeeeeeeebeeebbbbbbbbbeeeebbbbbeeeebeee: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :************************************** **********************************************************: 7cwn_A_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPXXXXSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS S EEEEEEEEE EE EEEEE S ---- S EEEEEEE EEEEEEEE TTS EEESTTSTTTTTTTTS SS SEEE: ExpBur :eebeeeebbbeeebebebebebeebbbbbbbeeeeeee----eeebeeebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeebebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :***************** ********************************************************************************: 7cwn_A_1 314:QTSNFRVQPTESIVRFPXXXNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EEEEEE EEEE --- HHHHTT S STT EEEEE SB HHHHHHH SEEE SS TTGGGTS BS EEEEEEEE TTGGGT STT: ExpBur :ebeeeebeeeeebebee---eebebeebbeeeebebbeebeeeebeebebebeebeeeeeeeeeebeeeeeeebeeeebbbbebbbbbbebebbeebbee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7cwn_A_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : SHHHHHT SS EEEE B TTTSS TT B EEE SS TT EESSSS TTS SSEE SEEE B TTS GGG EEEEEE: ExpBur :bebebbbbbbebbeebebbbbbbebbeebbeeebbeebebbeeeeeebeebeebeeeebbeeeeeebeeeeeeebeebbeebebbeeeeeeebbbbbbbb: Contact : b bb bbbb bb bb queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :************** ***********************************************************************************: 7cwn_A_1 514:SFELLHAPATVCGPXXXTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :E SS B --- SSEEEEEETTEEEEEEEEE TT B TTS EEE SSS EEEEE EEEEEEEES TTT S EEEEE: ExpBur :bbbeeeeeeebebe---eebbeeebbebbbeebeeebebbebeeebeeeeeebeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeeebbbbe: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ************************************ *************************: 7cwn_A_1 614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :T SS -------------------- EEE SSEEEES EE SS B SEEEETTEEE S ------------ EEEE B S TTEEE: ExpBur :ebeeeee--------------------eeeebeebbbeebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 7cwn_A_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 SecStr :EE EEEEEEEEEEE EEE HHHHHS S HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS SSS TTTS TTSSS: ExpBur :bbbebebebeebbbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbbebeeebeeeeeeebeebebeebbeeeeeee: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :************** ******************************************************************: 7cwn_A_1 814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : HHHHHHHHH -------------------- TTTHHHHTTEEE SS HHHHHHHHHHHHHHHHHHTTGGGSSS HHHHHHHHHHHHT T: ExpBur :eebebbbbbbeebe--------------------eeeeebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :****************************************************************************************************: 7cwn_A_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHHHHHHHHHHHHHHHHHHHHHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbeebbeebeeeeeebeebeebbeebbebbeebeeebeeeeebeeeebeebbeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7cwn_A_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHTTTS STTTSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EESSSSEEEESSSEEEESSSSEEEE SSS E: ExpBur :bbeebeebbeebbebbeebbbeebeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebebbbeeeebbbbbebbbeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 :**********************************: 7cwn_A_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 SecStr :E BGGGEEEES TTTSTT EE B SHHHHH : ExpBur :ebbeeebeeeeebeeeeebeeeebeeeeeeeeee: |