[pdbjlvh2]Protein Model on 7sqc_QD_1_JD

Protein Model on 7sqc_QD_1_JD_1 (TEMPLATE: 7sqc )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IMA1_HUMAN)	QD 1 (D6)	polymer(polypeptide(L)) [468 aa]	PF16 :A0A2K3DEG1_CHLRE
2	b		JD 1 (C4)	polymer(polypeptide(L)) [281 aa]	CPC1 :Q6J4H1_CHLRE	280D(K) 281G(H) 350N(H) (identity: 0.0 %/25.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7sqc_QD_1 identity=25.2%

queryA        75:NWSVDDIVKGINSSNVENQL------------QATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGG: 162
                :* * **            **            **         *         *  *     *  *   *       *** *  **    *    *** *:
7sqc_QD_1     70:NYS-DDLAEAVVQNEILPQLVYSLSEQNRFYKQAAAFCLRAVARHSPELAQSVIDSGALDSLVTCLEEFD-PGVKEASAWTLGYIAGHNAELAQQVVDAG: 167
SecStr          :TS -HHHHHHHHHTT HHHHHHHHHHS HHHHHHHHHHHHHHHTS HHHHHHHHHTTHHHHHHHHTTSS -HHHHHHHHHHHHHHHTS HHHHHHHHHHT:    
ExpBur          :eee-eebbebbeeeebbebbbebbeeeeeebbebbbbbbbbbbeebeebbeebbeeebbebbbebbeeee-eebbbbbbebbbebbeeeeebbeebbeee:    

queryA       163:AIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHH: 262
                :* *        *       *  **  *          *   ***  *  *    *         *     **                 * *     *  :
7sqc_QD_1    168:AVPLLVLCVQEPELSLKRIAASALSDISKHTPELAQAVVDAGAVAYLAPLVINQDAK-----LKRQVCCALSQIAKHSVDLAEVVVGAEIFPKILTCLKF: 262
SecStr          :HHHHHHHHHHS  HHHHHHHHHHHHHHHTS HHHHHHHHHSS HHHHGGGGGS  HH-----HHHHHHHHHHHHHSS HHHHHHHHHTS HHHHGGGGGS:    
ExpBur          :bbebbbebbeeeeeebbbbbbbbbbebbebeeebbeebbeeebbeebbebbeeeeee-----bbeebbbbbbebbebeeebbeebbeeebbeebbebbee:    

queryA       263:DDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTN-PKTNIQKEATWTMSN: 361
                : *  *                *    **  * *  **     *      *   * * *          **   **    * *   *         **   :
7sqc_QD_1    263:PDEFVKKHSATVVREVAKHTPELAQLVVGNGGVGALVDYISDSAGNNRLPGIMALGYIAAFSETLALSVIAEKALPPLVSALNEEPEDHLKSATAWTLGQ: 362
SecStr          :S HHHHHHHHHHHHHHHHS HHHHHHHHHHTHHHHHHHHHHH  TTTHHHHHHHHHHHHHH HHHHHHHHTT  HHHHHHHHHH   HHHHHHHHHHHHH:    
ExpBur          :eeeebbbebbbbbebbbebbeebbeebbeeebbebbbebbeebeeebbebbbebbbebbeeeeebbeebbeeebeebbeebbeeeeeeebbbbbbebbbb:    
Contact         :                 bb                                                                     b           

queryA       362:ITAGRQDQIQQVVNHGLVPFLVSVLSKA----DFKTQ: 394
                :*     *    *   *    ***  *      * ** :
7sqc_QD_1    363:IGRXXPDHAKAVADTGCLATLVSLESDXXXSDDLKTK: 399
SecStr          :HH -- HHHHHHHHTT HHHHHHHHH --- HHHHHH:    
ExpBur          :bbe--eebbeebeeeebeebbeebeee---eeeebbe:

Protein Model on 7sqc_QD_1_JD_1 (TEMPLATE: 7sqc )

Input Residue Numbers for Focused Sites