[pdbjlvh2]Protein Model on 7ar4_A_1_B

Protein Model on 7ar4_A_1_B_1 (TEMPLATE: 7ar4 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IMA1_HUMAN)	A 1 (AAA)	polymer(polypeptide(L)) [512 aa]	Catenin beta-1 :CTNB1_HUMAN
2	b		B 1 (PaP)	polymer(polypeptide(L)) [16 aa]	Cadherin-1 :CADH1_MOUSE	195V 197R(K) 234S(R) 235N 241N(D) 244P(T) 276S 277Y(N) 279T 280D(C) 281G(N) 286I(K) 311T(E) 312P 318G(R) 319N(H) 323G(R) 358T(P) 361N(K) (identity: 26.3 %/27.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7ar4_A_1 identity=27.4%

queryA       118:AGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF---RDLVIKYGAVDPLLALLA: 214
                :**   * *  *  *            *   * *  *        *   *             *   *         **           *    *   * :
7ar4_A_1     147:AGGLQKMVALLNKTNVKFLAITTD-CLQILAYGNQESKLIILASGGPQALVNIMRT---YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT: 242
SecStr          :TTHHHHHHHGGG   HHHHHHHHH-HHHHHHTT HHHHHHHHHTTHHHHHHHHHTT---   HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHHTTTT:    
ExpBur          :eebbeebbebbeeeeeebbbebbb-bbbbbbeeeeebbebbeeeebbebbbebbee---beeeebbbbbbbbbebbbebeebbeebbebbbbebbbebbe:    
Contact         :                                                                             b    b                 

queryA       215:VPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVK--LLGASELPIVTP: 312
                : *           *  *** **      *      *  * *** **  **  *        * **        **   *    **   *       *  *:
7ar4_A_1     243:DPSQR-----LVQNCLWTLRNL---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP: 334
SecStr          : S HH-----HHHHHHHHHHHH---HTT TT    HHHHHHHHHHTT S HHHHHHHHHHHHHHTTT HHHHHHHHHTTHHHHHHHHHHHHTT HHHHHH:    
ExpBur          :eebee-----bbbbbbebbebb---beebbeeeebeebbebbbebbeeeeeebbebbbbbbbebbeebeebbbbbbeeebbebbbebbeebeeeeebbeb:    
Contact         :                   bb     b  b                               bb bbb    b                          bb

queryA       313:ALRAIGNIVTGTDE----QTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV-VNH------GLVPFLVSVLSKADFKTQK--EAVW: 399
                :*  *         *    *  *    * * *   **  *         *     * *          **      *  * **  *  *   **       :
7ar4_A_1     335:AICALRHLTSRHQEAEMAQNAVRLHYG-LPVVVKLLHPP-------SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRXXXXXX: 426
SecStr          :HHHHHHHHTSSSTTHHHHHHHHHHTTH-HHHHHHTTSTT-------  HHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHH  ------:    
ExpBur          :bbbbbebbbbebeebeebbebbeeeeb-bebbbebbeee-------bebebbebbbebbebbbebeebbeebeeeebbebbbebbeebbeeeee------:    
Contact         :     bb   b                                      b  b                                               

queryA       400:AVTNYTSGGTVEQIV: 414
                :       *   * **:
7ar4_A_1     427:XXXXFVEGVRMEEIV: 441
SecStr          :---- GGG  HHHHH:    
ExpBur          :----eeeebebbebb:

Protein Model on 7ar4_A_1_B_1 (TEMPLATE: 7ar4 )

Input Residue Numbers for Focused Sites