Protein Model on 5mfd_G_1_H_1 (TEMPLATE: 5mfd )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:4]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(IMA1_HUMAN) G 1 (G) polymer(polypeptide(L)) [322 aa] YIIIM''6AII
2 b H 1 (H) polymer(polypeptide(L)) [104 aa] Capsid decoration protein,pD_(KR)5 :DECO_LAMBD 148A 149S 155T(I) 184W 188N 191G(S) 228N(E) 231W 235N 238R(S) 270D(E) 273W 276S(G) 277Y(N) 280D(S) 281G 311T(Q) 315R(W) 322T(S) 354E 357W 361N 434T(E) (identity: 47.8 %/39.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5mfd_G_1 identity=39.4%
queryA       121:IPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSS: 220
                : *  *  *   *    *      *  ****  **  ** * ** **   ** **   *   * * *****  *      **  **   *  **  *    :
5mfd_G_1       6:LPQMVQQLNSPDQQELQ-SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-: 103
SecStr          :HHHHHHGGG S HHHHH-HHHHHHHHHTTSHHHHHHHHHHTT HHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HH-:    
ExpBur          :eeebbeebebeeeeebb-ebbeebbeebeeeeeebeebbeeebbebbbebbeeeeeebbbbbbebbbbbbebbeebbebbbeeebbebbbebbeeeeee-:    
Contact         :                           bb     b                            b   b  b                             

queryA       221:LACGYLRNLTWTLSNLCR--NKNPAPPIDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIG: 318
                :     *    *** *     *      ***    ** ** **       *    *       * ** *  *   *  * ** **      *   **   *:
5mfd_G_1     104:----ILQEALWTLGNIASGGNEQIQAVIDAG--ALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLG: 197
SecStr          :----HHHHHHHHHHHHTTS HHHHHHHHHTT-- HHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG S HHHHHHHHHHHH:    
ExpBur          :----bbbbbbebbbbbbebbeebbeebbeee--bbeebbebbeeeeeebbebbbebbbbbbebeeebbebbbeeebbeebbebbeeeeeebbebbbebbb:    
Contact         :       b  b   b  b                                 b  b  bb  bb                             b   b   

queryA       319:NIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVH: 418
                :**  *  ** * *******     **  *   *  ** **  **  *   *** *   *  * **  **        ** *   *  ***  **      :
5mfd_G_1     198:NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWTLGNIASGGN-EQKQAVKE: 296
SecStr          :HHTTS HHHHHHHHHTTHHHHHHHGGG S HHHHHHHHHHHHHHTTS HHHHHHHHHTTHHHHHHHGGG   HHHHHHHHHHHHHHHTS H-HHHHHHHH:    
ExpBur          :bbbeeeeebbbbbbeeebbeebbebbeeeeeebbebbbebbbbbbebeeebbbbbbeeebbebbbebbebeeeebbebbbebbbbbbebee-ebeebbee:    
Contact         :   b                               b  b   b                                                         


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