#WARNING:no index is registered index "YP_009725299.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725299.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 5e6j_D_1_E_1

Protein Model on 5e6j_D_1_E_1 (TEMPLATE: 5e6j )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) D 1 (D) polymer(polypeptide(L)) [313 aa] Replicase polyprotein 1ab :R1AB_CVHSA
2 b E 1 (E) polymer(polypeptide(L)) [76 aa] ubiquitin :UBC_HUMAN 851W 854N 855N 856C 857Y 907L 908G 909D 911R 912E 944L 948E 952Y 953M 968P 970T(V) 977K(Q) 993P 1009Y 1013Y 1014Q 1015C 1016G 1018Y 1046T (identity: 92.0 %/82.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:5e6j_D_1 identity=82.7%
queryA       748:RTIKVFTTVDNINLHTQVVDMSMTYGQQFGPTYLDGADVTKIKPHNSHEGKTFYVLPNDDTLRVEAFEYYHTTDPSFLGRYMSALNHTKKWKYPQVNGLT: 847
                : ********** ***** ***************************  ****** *** ***** ******** * ***************** *** ***:
5e6j_D_1       4:KTIKVFTTVDNTNLHTQLVDMSMTYGQQFGPTYLDGADVTKIKPHVNHEGKTFFVLPSDDTLRSEAFEYYHTLDESFLGRYMSALNHTKKWKFPQVGGLT: 103
SecStr          : EEEEEEESSSSS EEEEEETTS HHHHHSSEEETTEE SSS   GGGTT EEEE   SHHHHHHHHHHHS   TTHHHHHHHHHHHHTTS   EETTEE:    
ExpBur          :eebebebbbbeeeeeeeebeeeebbeeebeebbbebeebbeeebeeebeeeebbbebeeeebeebbeebbeeeeeebbbebbebbeebeebebeebeebb:    

queryA       848:SIKWADNNCYLATALLTLQQIELKFNPPALQDAYYRARAGEAANFCALILAYCNKTVGELGDVRETMSYLFQHANLDSCKRVLNVVCKTCGQQQTTLKGV: 947
                :***********   ** *** * *** **** ******** *********** **************  * ***** * ********* ***  *** **:
5e6j_D_1     104:SIKWADNNCYLSSVLLALQQLEVKFNAPALQEAYYRARAGDAANFCALILAYSNKTVGELGDVRETMTHLLQHANLESAKRVLNVVCKHCGQKTTTLTGV: 203
SecStr          :   S SS HHHHHHHHHHTTS   BSSHHHHHHHHHHHHT  HHHHHHHHHHTT  TT    HHHHHHHHHTTB  TT EEEEEEE SSS  EEEEEEGG:    
ExpBur          :bbeeeeebbbbbbbbbbbbbbebebebebbbebbeebeeeebbbbbbbbbbbbebeeeeeeebeebbeebbebbebeebebbbbeebeeeeeeeeeeeeb:    
Contact         :   b  bbbb                                                 bbb bb                               b   

queryA       948:EAVMYMGTLSYEQFKKGVQIPCTCGKQATKYLVQQESPFVMMSAPPAQYELKHGTFTCASEYTGNYQCGHYKHITSKETLYCIDGALLTKSSEYKGPITD:1047
                :***********   * ** *** **  ** ******* ********* * *  *** ** *********** *** ***** **** *** ****** **:
5e6j_D_1     204:EAVMYMGTLSYDNLKTGVSIPCVCGRDATQYLVQQESSFVMMSAPPAEYKLQQGTFLCANEYTGNYQCGHYTHITAKETLYRIDGAHLTKMSEYKGPVTD: 303
SecStr          :GGTEEES S HHHHHH EEEE SSSSEEEEEEEEEESSEEEEEEEEEEEEE TTS SEEEEEEEETTEEEEEEEEESSSEEEEETTEEEEES EEEEEEE:    
ExpBur          :ebbbbeebbbbeebeeeeeeebeeeeebebbbeebebebbbbbbeeeeeebeeeebebbbbbeeeeeeeebbbbbeeeebbebebeeeeeeeebebebbb:    
Contact         :b   bb              b b      b               b               b   bbbb b                           b 

queryA      1048:VFYKENSYTTTIK:1060
                :***** *******:
5e6j_D_1     304:VFYKETSYTTTIK: 316
SecStr          :EEEE SEEE    :    
ExpBur          :bbbebeeeebeee:    


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