[pdbjlvh2]Protein Model on 8eqj_A_1_D

Protein Model on 8eqj_A_1_D_1 (TEMPLATE: 8eqj )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(AP3A_SARS2)	A 1 (A)	polymer(polypeptide(L)) [192 aa]	ORF3a protein :AP3A_SARS2
2	b		D 1 (A)	non-polymer(PEE)	1,2-dioleoyl-sn-glycero-3-phosphoethanolamine	75K 76G 78H 79F 122R 123I 140L (identity: 100.0 %/96.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8eqj_A_1 identity=96.5%

queryA        40:SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPL: 139
                :****************************************************************************************************:
8eqj_A_1      40:SLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPL: 139
SecStr          :   SHHHHHHHHHHHHHHHHHTT  S SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT  TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHH:    
ExpBur          :eeeeeeeeebeeebeeeeeebeeeeeeeeebbeebeebeeebeebeeebbebbeebbeeeeeeeeeeeebeeeeeebeeeeeeeeebeebbeebebebbe:    
Contact         :                                   bb bb                                          bb                

queryA       140:LYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVD: 238
                :**********************************       **********************************************************:
8eqj_A_1     140:LYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDXXXXXXXEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVD: 238
SecStr          :H   SEEEEEE SS EEEEEE S  SEEEEEEE -------  EEEETTEEEE  S   SEEEEE SS EEEEEEEEEE HHHH  TTEEEEEEEE   :    
ExpBur          :bbebeebbbbebeeebbbbbbeeeeeebebbbbe-------eeebebeeeebeeebeeeeebbbbbeeeeeebeeeeeeeeeeeeeeebbebebeeeee:    
Contact         :b

Protein Model on 8eqj_A_1_D_1 (TEMPLATE: 8eqj )

Input Residue Numbers for Focused Sites