Protein Model on 8ia0_Y_1_A_1 (TEMPLATE: 8ia0 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) Y 1 (CW) polymer(polypeptide(L)) [540 aa] ATP-dependent RNA helicase :G0RYG4_CHATD
2 b A 1 (C1) polymer(polyribonucleotide) RNA (3341-MER) 294P 296R 324I(V) 326G 346T 347P 348G 349R 361L(A) 374G(R) 380Y(F) 383F(E) 385N(T) 393Q(K) 419S(I) 420E(T) 422I(G) 514R(S) 519C 528Q(R) 546H 547G 550K(E) 552H 554R 557N 560R 572T 573D 574V(I) (identity: 53.3 %/37.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8ia0_Y_1 identity=37.7%
queryA        13:IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ: 112
                :*   *  *    **  *        *  **   * ****** ** ***                                                    :
8ia0_Y_1      26:ILDYVSSMGYEQPTPVQKSCLDIFRGNKDVVVEAVTGSGKTLAFLIPVVE--------------------------------------------------:  75
SecStr          :HHHHHHHHT  S  HHHHHHHHHTTSS EEEEE  TTSSHHHHHHHHHHH--------------------------------------------------:    
ExpBur          :bbebbeeeeeeebeebbeebbeebbeeebbbbbbbbeebbebbbbbbbbb--------------------------------------------------:    

queryA       113:SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL: 212
                :                                                                                                    :
8ia0_Y_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       213:GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP--------------KALIVEPSREL: 298
                :                                                                                          * *  * ***:
8ia0_Y_1      76:---------------------------------------------------------------------------RLLRLDEAAKKHHVQAIIISPTREL: 100
SecStr          :---------------------------------------------------------------------------HHHTSSS   TTB  EEEE SSHHH:    
ExpBur          :---------------------------------------------------------------------------bbbeeeebbeebbbbbbbbbbbebb:    
Contact         :                                                                                               b b  

queryA       299:AEQTLNNIKQFKKYIDNPKLRELL---------------------IIGG-VAARDQLSV-LENGVDIVVGTPGRLDDLVSTG--KLNLSQVRFLVLDEAD: 373
                :* *  *      *    *   ***                       ** * *   **  *       *******  * *    *   *    ** ****:
8ia0_Y_1     101:ASQIYNVLVSLIKF--HPESSELLQYAKSDEKRPATTKPVIVPQLLVGGTVKAAEDLSIFLRLSPNLLVGTPGRLAELLSSPYVKTPASSFEVLVMDEAD: 198
SecStr          :HHHHHHHHHHHHHH--SHHHHTTTTSSSSSS     SS    EEEE  SSS HHHHHHHHHHH  SEEEE HHHHHHHHHSTTSB  TTT  EEEEESHH:    
ExpBur          :beebbeebbebbee--beebeebbeebeeeeebeeeeebbbbbbebebeeeeeeebeebbebbbbbbbbbbbebbbebbebeebebeeebbebbbbbbbb:    
Contact         :                                              b b                     bbbb             b            

queryA       374:GLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK----------GEDSVPDTVH--HVVVPVNPKTDRLWERLGK: 461
                : **  * *    *     *     *        ** * *  *  *    *  *                 *   *        * *   *   *   * *:
8ia0_Y_1     199:RLLDLGFSPELTRILGYLPKQRRTG------LFSASL-SDAVERLITVGMLYPHKITVRVXXXXXXXXXEERKTPMSLQMSYIVTPASHKIPALCQILEK: 291
SecStr          :HHTSSTTHHHHHHHHHHS SS EEE------EEES T-TSSGGGTTTT  SSEEEEE   ---------   SS SSEEEEEEE  STTHHHHHHHHHTS:    
ExpBur          :ebbbeebeeebeebbeebbeebbbb------bbbbbb-eebeeeeeebebeeeeeeebee---------eeebbeeebebbebebebbbbbbbebbbbee:    
Contact         :b     b  b b       b                         bb b                                                   

queryA       462:SHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERF: 561
                :              **                                * *  *   *     **     *    *   * * ***   ** *  * ***:
8ia0_Y_1     292:L-----------DPRP-----------------------------QRSIVFFST---CFAV-KYFARVLHGILPAG--YSIVSLHGKLEPHVREKNYERF: 345
SecStr          :S-----------SS  -----------------------------SEEEEE S ---HHHH-HHHHHHTTTTSSSS-- EEEEE TTS HHHHHHHHHHH:    
ExpBur          :b-----------eeeb-----------------------------ebbbbbbeb---bbbb-ebbbebbeeeeeee--beebbbbeebeeeebeebbeeb:    
Contact         :                                                    b    b        b                 bb  b b b  b  b 

queryA       562:KKG-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR: 634
                :        *  ** **** **  *  **    *       ** ** *** * **         *         *:
8ia0_Y_1     346:VTATSPTVLLTTDIAARGLDIPQVDLVIQHDPPTDTKVFIHRCGRAGRAGRRGLSVVMLQPGREEGYVQLLEVR: 419
SecStr          :HT  S EEEEESGGGGSS   SSEEEEEESS  SSTTSHHHHHHHH SSSS EEEEEEE SSGGGTHHHHHHTT:    
ExpBur          :eebeeebbbbbbebbbbbbebeebbbbbbbbbbeeebbbbbbbbbbbeeeeebbbbbbbbeeebebbeeebeee:    
Contact         :           bbb

Input Residue Numbers for Focused Sites

ex) 2,15,123