Protein Model on 8i9z_Y_1_A_1 (TEMPLATE: 8i9z )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) Y 1 (CW) polymer(polypeptide(L)) [537 aa] ATP-dependent RNA helicase :G0RYG4_CHATD
2 b A 1 (C1) polymer(polyribonucleotide) RNA (3341-MER) 294P 296R 325G 326G 328A(K) 346T 348G 349R 352D(E) 360N(P) 361L(A) 374G(R) 380Y(F) 383F(E) 385N(T) 386R 393Q(K) 419S(I) 420E(T) 514R(S) 515T 519C 528Q(R) 547G 549R(L) 552H 553E(V) 554R 556Q(K) 557N 572T 573D 574V(I) (identity: 48.5 %/36.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8i9z_Y_1 identity=36.9%
queryA        13:IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ: 112
                :*   *  *    **  *        *  **   * ****** ** ***                                                    :
8i9z_Y_1      26:ILDYVSSMGYEQPTPVQKSCLDIFRGNKDVVVEAVTGSGKTLAFLIPVVE--------------------------------------------------:  75
SecStr          :HHHHHHHH   S  HHHHHHHHHHHTT EEEEE  TTS HHHHHHHHHHH--------------------------------------------------:    
ExpBur          :bbebbeeeeeeebeebbeebbeebbeeebbbbbbebebebebbbbbbbbb--------------------------------------------------:    

queryA       113:SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL: 212
                :                                                                                                    :
8i9z_Y_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       213:GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP--------------KALIVEPSREL: 298
                :                                                                                          * *  * ***:
8i9z_Y_1      76:---------------------------------------------------------------------------RLLRLDEAAKKHHVQAIIISPTREL: 100
SecStr          :---------------------------------------------------------------------------HHHHSSS   SSB  EEEE SSHHH:    
ExpBur          :---------------------------------------------------------------------------bbeeeeeebeebbbbbbbbbbbebb:    
Contact         :                                                                                               b b  

queryA       299:AEQTLNNIKQFKKY-------------------IDNPKLRELLIIGG-VAARDQLSV-LENGVDIVVGTPGRLDDLVSTG--KLNLSQVRFLVLDEADGL: 375
                :* *  *      *                       *     *  ** * *   **  *       *******  * *    *   *    ** **** *:
8i9z_Y_1     101:ASQIYNVLVSLIKFHPESSELLQYAKSDEKRPATTKPVIVPQLLVGGTVKAAEDLSIFLRLSPNLLVGTPGRLAELLSSPYVKTPASSFEVLVMDEADRL: 200
SecStr          :HHHHHHHHHHHHHTSTTHHHHHHHHSSSS     SS    EEEE  SSS HHHHHHHHHHH  SEEEE HHHHHHHHHSTT B  TTS  EEEEESHHHH:    
ExpBur          :bebbeebbeebbeebeebeebeeebeeeeebeeeeeebbbbbbbebeeeeeeebeeebeebbbbbbbbbbebbbebbeeeebebeeebbebbbbbbbbeb:    
Contact         :                                             bb  b                  b bb  b         bb            b 

queryA       376:LSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLK----------GEDSVPDTVH--HVVVPVNPKTDRLWERLGKSH: 463
                :*  * *    *     *     *        ** * *  *  *    *  *                 *   *        * *   *   *   * *  :
8i9z_Y_1     201:LDLGFSPELTRILGYLPKQRRTG------LFSASL-SDAVERLITVGMLYPHKITVRVXXXXXXXXXEERKTPMSLQMSYIVTPASHKIPALCQILEKL-: 292
SecStr          :TSGGGHHHHHHHHHHS SSSEEE------EEES  -TTSGGGGGGT  SSEEEEE   ---------    S TTEEEEEEE  GGGHHHHHHHHHHT -:    
ExpBur          :bbeebeeebeebbeebbeebebb------bbbbbb-eebeeebeebebeeeeeeeeee---------eeebbbeebebbebebebbbbbbbbbbbbeeb-:    
Contact         :    b  b bb      b                         bb                                                       

queryA       464:IRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKK: 563
                :            **                                * *  *   *     **     *    *   * * ***   ** *  * ***  :
8i9z_Y_1     293:----------DPRP-----------------------------QRSIVFFST---CFAV-KYFARVLHGILPAG--YSIVSLHGKLEPHVREKNYERFVT: 347
SecStr          :----------SS  -----------------------------SEEEEE S ---HHHH-HHHHHHSSSSS SS--  EEEE TTS HHHHHHHHHHHHT:    
ExpBur          :----------eeeb-----------------------------ebbbbbbeb---bebb-ebbbebbeeebbee--bebbbbbeeeeeeebeebbeebee:    
Contact         :                                                  bb   b        b                  b b  bbb bb      

queryA       564:G-DVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSR: 634
                :      *  ** **** **  *  **    *       ** ** *** * **         *         *:
8i9z_Y_1     348:ATSPTVLLTTDIAARGLDIPQVDLVIQHDPPTDTKVFIHRCGRAGRAGRRGLSVVMLQPGREEGYVQLLEVR: 419
SecStr          :  S EEEEE GGGSSS   SS  EEEESS  SSHHHHHHHHTTS SSSS EEEEEEE SSGGGTHHHHHHHH:    
ExpBur          :beeebbbbbbebbbbebebeebbbbbbbbbbeebbbbbbbbbbbbbeeeebbbbbbbbeeebeebbeebeee:    
Contact         :         bbb

Input Residue Numbers for Focused Sites

ex) 2,15,123