[pdbjlvh2]Protein Model on 8i9x_G_1_A

Protein Model on 8i9x_G_1_A_1 (TEMPLATE: 8i9x )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	G 1 (CE)	polymer(polypeptide(L)) [462 aa]	RNA helicase :G0RYU9_CHATD
2	b		A 1 (C1)	polymer(polyribonucleotide)	RNA (3341-MER)	296R 300E(L) 327V(A) 328A(N) 330R 335V(K) 338N(K) 519C 520D(N) 548D(K) (identity: 30.0 %/33.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8i9x_G_1 identity=33.9%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :***         *  **     * **   **  * * *** ** ****** ** **                                            :
8i9x_G_1     113:FSELNLSEKTTKAIAEMGFTKMTEIQRRAIPPALAGKDVLGAAKTGSGKTLAFLIPAVEML---------------------------------------: 173
SecStr          :TTTS   HHHHHHHHHHT  B  HHHHHHHHHHHHT  EEEE  TTSSHHHHHHHHHHHHH---------------------------------------:    
ExpBur          :beebebbeebeebbeebeeeebeebbeebbebbeeeebbbbbbeeeeebebbbbbbbbebb---------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
8i9x_G_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQT: 302
                :                                                                              * * *   *  * * **** * :
8i9x_G_1     173:-------------------------------------------------------------------------LSSLRFKPRNGTGAIVVTPTRELALQI: 199
SecStr          :-------------------------------------------------------------------------HHHHT  TTT   EEEE SSHHHHHHH:    
ExpBur          :-------------------------------------------------------------------------beeeebeeeebbbbbbbbbbbbbbbeb:    
Contact         :                                                                                             b   b  

queryA       303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402
                :        **           ***   *     *  **     ***** *              *  ****  *  *  *         *          :
8i9x_G_1     200:FGVARELMKYHSQT---YGVVIGGANRRAEAEKLGKGVNLLIATPGRLLDHLQNTPFVFKNLKSLIIDEADRILEIGFEDEMRQIVKILP----------: 286
SecStr          :HHHHHHHSSSSS  ---EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHHS    TT  EEEEE HHHHHHHT HHHHHHHHHHS ----------:    
ExpBur          :bbbbebbbeebebe---ebbbbebeeeeebeeebeebbbbbbbbbbbbbebbeebebeeeebebbbbbbbbbbbeeeebeebeebbeebe----------:    
Contact         :                        bb b    b  b                                                                

queryA       403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK: 502
                :              *     * *      * **                  *   * *   *  *    *  *  *        ** *           *:
8i9x_G_1     287:--------------KEDRQTMLFSATQTTKVEDLA----------------RISLRPGPLYINVDE-EKKYSTVEGLEQGYVVVEADKRFLLLFSF--LK: 353
SecStr          :-------------- TT EEEEEESS  HHHHHHH----------------HHHS SS EEEE   -S      S   EEEEE  TTSHHHHHHHH--HH:    
ExpBur          :--------------eeebbbbbbbeeeeeebeebb----------------eebbeeeeeebeeee-eeeeeeeeebebbbbebebbebbbbbbbb--be:    

queryA       503:EHKMDQAIIFCRTKIDCDNLEQY--FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV: 600
                :       * *      *     *    *    *           ***  *   *      *       ********** **  *        **    * :
8i9x_G_1     354:KMAKKKIIVFFSS---CNSVKYYSELLQYIDLP--------VLDLHGKQKQQKRTNTFFEFCNAKSGTLICTDVAARGLDIPQVDWIVQFDPPDDPRDYI: 442
SecStr          :HSTTSEEEEEES ---HHHHHHHHHHHHHTT  -------- EEE TTS HHHHHHHHHHHHHSSSEEEEEEHHHHHHS     SEEEE S  SSHHHHH:    
ExpBur          :ebeeebbbbbbbb---bbbbbbbbebbeebebe--------eebbbeebebeebeebbeebeeeeeebbbbbbbbbbeeebeebbbbbbbbbbbbbeebb:    
Contact         :                bb                             b                                                    

queryA       601:HRIGRVGR: 608
                :** **  *:
8i9x_G_1     443:HRVGRTAR: 450
SecStr          :HHHHHHHS:    
ExpBur          :eebbeebe:

Protein Model on 8i9x_G_1_A_1 (TEMPLATE: 8i9x )

Input Residue Numbers for Focused Sites