[pdbjlvh2]Protein Model on 8i9x_AA_1_A

Protein Model on 8i9x_AA_1_A_1 (TEMPLATE: 8i9x )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	AA 1 (Cb)	polymer(polypeptide(L)) [642 aa]	ATP-dependent RNA helicase DBP10 :G0S5S8_CHATD
2	b		A 1 (C1)	polymer(polyribonucleotide)	RNA (3341-MER)	15Q(R) 19E(R) 294P 295S 296R 308Q(E) 326G 327V(D) 329A(L) 346T 349R 352D(H) 362S 380Y(F) (identity: 50.0 %/33.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8i9x_AA_1 identity=33.0%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*  **       *        ** **   *****   **   * ****** ** ** *                                          :
8i9x_AA_1     92:FQAMGLDANLLRAIARKGFSVPTPIQRKTIPLILERRDVVGMARTGSGKTAAFVIPMIE-----------------------------------------: 150
SecStr          :TTTTT  HHHHHHHHHH   S  HHHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHHH-----------------------------------------:    
ExpBur          :beeeebeeebeebbeeeeeeebeebbeebbebbeeeebbbbbbebebebebbbbbbbbb-----------------------------------------:    
Contact         :           b   b                                                                                    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
8i9x_AA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-----------KALIV: 292
                :                                                                                                **  :
8i9x_AA_1    151:------------------------------------------------------------------------------------RLKAHSARFGARALVL: 166
SecStr          :------------------------------------------------------------------------------------HH S  SBS   EEEE:    
ExpBur          :------------------------------------------------------------------------------------ebeeeeeebbbebbbb:    

queryA       293:EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP: 392
                : ****** ***   *   *  *   *   *  **     *        **   ****   *     * **     * **** *   *            *:
8i9x_AA_1    167:SPSRELALQTLKVVKELGKGTD---LKTVLLVGGDSLEEQFGLMATNPDIIIATPGRFLHLKVEMSLDLSSIKYVVFDEADRLFEMGFAAQLTEILHALP: 263
SecStr          : SSHHHHHHHHHHHHHHSTTS ---  EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHHHT  GGG  EEEEETHHHHHHHT HHHHHHHHHHS :    
ExpBur          :bbbeebbeebeebbeebbeeee---beebbbbeeeeeeebbbbbbbbbbbbbbbbbbbbebbbbbeeebeebebbbbbbbbbbbeeeeeebbebbbeebb:    
Contact         : bbb           b                 bb b                b  b  b         b                 b            

queryA       393:QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK-SHIRTDDVHAKDNTRPGANSPEMWSEAIKI: 491
                :         *    **** *             *  * *  *  *          *        *  *   **  *         *              :
8i9x_AA_1    264:PSR------QTLLFSATLPS-SLVEFTRAGLQDPVLVRLDAETKVSPDLESAFFSV-----KSGEKEGALLHILYDIIKMPLGDPPXXXXXXXXXXXXXX: 351
SecStr          :S  ------EEEEEES   H-HHHHHHHHH SS EEEE S SSS  TTEEEEEEE ----- GGGHHHHHHHHHHTTS    SS  --------------:    
ExpBur          :eeb------bbbbbbbbbbe-ebbebbeebbeebbbbebeeeeeeeeebebbbbbb-----eeebbbbbbbbbbeeebebeeeeee--------------:    

queryA       492:LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT: 591
                :                  ***  **             *         **     *      **     *  *    *  **********     ***  :
8i9x_AA_1    352:XXXXXXXXXXXKPTEHSTIIFTATKHHVEYISNLLRLAG---------FSVSYVYGSLDQTARKIQVDNFRRGRTNILVVTDVAARGIDIPVLANVINYD: 442
SecStr          :-----------   SS EEEE S HHHHHHHHHHHHHHT---------  EEEE TT  HHHHHHHHHHHHHTS SEEEE SHHHHHS     SEEEESS:    
ExpBur          :-----------eeeebbbbbbbbbbbbbebbbebbeebe---------bbbbebbeebeeebbeebeeebeebebbbbbbbbbbbbbbebbebebbbbbb:    

queryA       592:LPDEKQNYVHRIGRVGRAERMGLAISLV: 619
                : *      *** **  **   * *  **:
8i9x_AA_1    443:FPPQPKIFVHRVGRTARAGQRGWAYALV: 470
SecStr          :  S HHHHHHHHHTSS TT  EEEEEEE:    
ExpBur          :bbbebbbbbbbbebbbeeeeebebbbbb:

Protein Model on 8i9x_AA_1_A_1 (TEMPLATE: 8i9x )

Input Residue Numbers for Focused Sites