[pdbjlvh2]Protein Model on 8i9w_Z_1_A

Protein Model on 8i9w_Z_1_A_1 (TEMPLATE: 8i9w )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	Z 1 (Cb)	polymer(polypeptide(L)) [634 aa]	ATP-dependent RNA helicase DBP10 :G0S5S8_CHATD
2	b		A 1 (C1)	polymer(polyribonucleotide)	RNA (3341-MER)	15Q(R) 19E(R) 294P 295S 296R 308Q(E) 326G 346T 351D(L) 352D(H) 355S(V) 378Q(M) 380Y(F) (identity: 38.5 %/33.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8i9w_Z_1 identity=33.0%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*  **       *        ** **   *****   **   * ****** ** ** *                                          :
8i9w_Z_1      92:FQAMGLDANLLRAIARKGFSVPTPIQRKTIPLILERRDVVGMARTGSGKTAAFVIPMIE-----------------------------------------: 150
SecStr          :HHHHT  HHHHHHHHHHT  S  HHHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHHH-----------------------------------------:    
ExpBur          :beeeebeeebeebbeeeeeeebeebbeebbebbeeeebbbbbbebeeebbbbbbbbbbe-----------------------------------------:    
Contact         :           b   b                                                                                    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
8i9w_Z_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-----------KALIV: 292
                :                                                                                                **  :
8i9w_Z_1     151:------------------------------------------------------------------------------------RLKAHSARFGARALVL: 166
SecStr          :------------------------------------------------------------------------------------HH S  SSS   EEEE:    
ExpBur          :------------------------------------------------------------------------------------ebeeeeeebbbbbbbb:    

queryA       293:EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP: 392
                : ****** ***   *   *  *   *   *  **     *        **   ****   *     * **     * **** *   *            *:
8i9w_Z_1     167:SPSRELALQTLKVVKELGKGTD---LKTVLLVGGDSLEEQFGLMATNPDIIIATPGRFLHLKVEMSLDLSSIKYVVFDEADRLFEMGFAAQLTEILHALP: 263
SecStr          : SSHHHHHHHHHHHHHHSTTS ---  EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHHHT   TT  EEEEESHHHHHHHT HHHHHHHHHHS :    
ExpBur          :bbeeeebeebbebbeebbeeee---bebbebbeebebeebbbbbbbbbbbbbbbbebbbebebbbebebeebebbbbbbbbbbbeeebeebbeebbeebb:    
Contact         : bbb           b                 b                   b    bb  b                      b b            

queryA       393:QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK-SHIRTDDVHAKDNTRPGANSPEMWSEAIKI: 491
                :         *    **** *             *  * *  *  *          *        *  *   **  *         *              :
8i9w_Z_1     264:PSR------QTLLFSATLPS-SLVEFTRAGLQDPVLVRLDAETKVSPDLESAFFSV-----KSGEKEGALLHILYDIIKMPLGDPPXXXXXXXXXXXXXX: 351
SecStr          :SS ------EEEEEES   H-HHHHHHHHH SS      STTTS  TTEEEEEEE ----- STTHHHHHHHHHHHTT    SS  --------------:    
ExpBur          :eeb------bbbbbbbbbbe-ebbebbeebbeebbbbebeeeeebeeebbbbbbbb-----eeebbbbbbbbbbeebbebeeeeee--------------:    

queryA       492:LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT: 591
                :                  ***  **             *         **     *      **     *  *    *  **********     ***  :
8i9w_Z_1     352:XXXXXXXXXXXKPTEHSTIIFTATKHHVEYISNLLRLAG---------FSVSYVYGSLDQTARKIQVDNFRRGRTNILVVTDVAARGIDIPVLANVINYD: 442
SecStr          :-----------   SS EEEE SSHHHHHHHHHHHHHHT---------  EEEE TT  HHHHHHHHHHHHHTS  EEEE SHHHHHS    BSEEEESS:    
ExpBur          :-----------ebeebbbbbbbbbbbbbebbbebbeebe---------bbbbebbeebeeeeeeebbebbeebebbbbbbbbbbbbebebeebbbbbbbb:    

queryA       592:LPDEKQNYVHRIGRVGRAERMGLAISLV: 619
                : *      *** **  **   * *  **:
8i9w_Z_1     443:FPPQPKIFVHRVGRTARAGQRGWAYALV: 470
SecStr          :  SSHHHHHHHHHTBS TT  EEEEEEE:    
ExpBur          :bbbebbbbbebbebbbeeeeebebbbbb:

Protein Model on 8i9w_Z_1_A_1 (TEMPLATE: 8i9w )

Input Residue Numbers for Focused Sites