[pdbjlvh2]Protein Model on 8i9t_Y_1_J

Protein Model on 8i9t_Y_1_J_1 (TEMPLATE: 8i9t )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	Y 1 (Cb)	polymer(polypeptide(L)) [560 aa]	ATP-dependent RNA helicase DBP10 :G0S5S8_CHATD
2	b		J 1 (CH)	polymer(polypeptide(L)) [476 aa]	Nucleolar GTP-binding protein 1 :NOG1_CHATD	454R(K) 472K(P) 473D(L) 528Q(L) 529Q(A) 530G (identity: 16.7 %/33.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8i9t_Y_1 identity=33.0%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*  **       *        ** **   *****   **   * ****** ** ** *                                          :
8i9t_Y_1      92:FQAMGLDANLLRAIARKGFSVPTPIQRKTIPLILERRDVVGMARTGSGKTAAFVIPMIE-----------------------------------------: 150
SecStr          :HHHHT  HHHHHHHHHHT  S  HHHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHHH-----------------------------------------:    
ExpBur          :beebebeeebeebbeeeeeeebeebbeebbebbeeeebbbbbbebebebbbbbbbbbbb-----------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
8i9t_Y_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-----------KALIV: 292
                :                                                                                                **  :
8i9t_Y_1     151:------------------------------------------------------------------------------------RLKAHSARFGARALVL: 166
SecStr          :------------------------------------------------------------------------------------HH S  SSSS  EEEE:    
ExpBur          :------------------------------------------------------------------------------------ebeeeeeeebbbbbbb:    

queryA       293:EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP: 392
                : ****** ***   *   *  *   *   *  **     *        **   ****   *     * **     * **** *   *            *:
8i9t_Y_1     167:SPSRELALQTLKVVKELGKGTD---LKTVLLVGGDSLEEQFGLMATNPDIIIATPGRFLHLKVEMSLDLSSIKYVVFDEADRLFEMGFAAQLTEILHALP: 263
SecStr          : SSHHHHHHHHHHHHHHTTTS ---  EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHHHT   TT  EEEEETHHHHHHHT HHHHHHHHHHS :    
ExpBur          :bbeeeebeebbebbeebbeeee---bebbbbbeeeeeeebeeebeebbbbbbbbbebbbebbeeeeeebeebebbbbbbbbbbbeeeeeebbeebbeebe:    

queryA       393:QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGK-SHIRTDDVHAKDNTRPGANSPEMWSEAIKI: 491
                :         *    **** *             *  * *  *  *          *        *  *   **  *         *              :
8i9t_Y_1     264:PSR------QTLLFSATLPS-SLVEFTRAGLQDPVLVRLDAETKVSPDLESAFFSV-----KSGEKEGALLHILYDIIKMPLGDPPXXXXXXXXXXXXXX: 351
SecStr          :SS ------EEEEEES   H-HHHHHHHHH SS EEEE SSSSS  TTEEEEEEE ----- GGGHHHHHHHHHHTTS    SS  --------------:    
ExpBur          :eeb------bbbbbbbbbbe-ebbebbeebbeebbbbebeeeeebeeebebbbbbb-----eeebbbbbbbbbbeebbebeeeeee--------------:    
Contact         :                                                             b                  bb                  

queryA       492:LKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVT: 591
                :                  ***  **             *         **     *      **     *  *    *  **********     ***  :
8i9t_Y_1     352:XXXXXXXXXXXKPTEHSTIIFTATKHHVEYISNLLRLAG---------FSVSYVYGSLDQTARKIQVDNFRRGRTNILVVTDVAARGIDIPVLANVINYD: 442
SecStr          :-----------   SS EEEE S HHHHHHHHHHHHHHT---------  EEE  TT  HHHHHHHHHHHHHTS SEEEE SHHHHHS     SEEEESS:    
ExpBur          :-----------eeeebbbbbbbbbbbbbebbbebbeebe---------bbbbebbbebeeeebeebbebbeeeebbbbbbbbbbbbebebbebebbbbbb:    
Contact         :                                    bbb                                                             

queryA       592:LPDEKQNYVHRIGRVGRAERMGLAISLV: 619
                : *      *** **  **   * *  **:
8i9t_Y_1     443:FPPQPKIFVHRVGRTARAGQRGWAYALV: 470
SecStr          :  SSHHHHHHHHHTSS TT  EEEEEEE:    
ExpBur          :bbbbbbbbbebbebbbeeeeebebbbbb:

Protein Model on 8i9t_Y_1_J_1 (TEMPLATE: 8i9t )

Input Residue Numbers for Focused Sites