CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | F 1 (CE) | polymer(polypeptide(L)) [463 aa] | RNA helicase :G0RYU9_CHATD | |
2 | b | A 1 (C1) | polymer(polyribonucleotide) | RNA (3341-MER) | 296R 300E(L) 324I 327V(A) 328A(N) 330R 335V(K) 338N(K) 519C 520D(N) 548D(K) (identity: 36.4 %/33.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8i9r_F_1 identity=33.9% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :*** * ** * ** ** * * *** ** ****** ** ** : 8i9r_F_1 113:FSELNLSEKTTKAIAEMGFTKMTEIQRRAIPPALAGKDVLGAAKTGSGKTLAFLIPAVEML---------------------------------------: 173 SecStr :TTTS HHHHHHHHHHT B HHHHHHHHHHHHT EEE TTSSHHHHHHHHHHHHH---------------------------------------: ExpBur :beebebeeebeebbeebeeeebeebbeebbebbeeeebbbbbbebeebbebbbbbbbbbbb---------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 8i9r_F_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQT: 302 : * * * * * * **** * : 8i9r_F_1 173:-------------------------------------------------------------------------LSSLRFKPRNGTGAIVVTPTRELALQI: 199 SecStr :-------------------------------------------------------------------------HHHTT GGG SEEEE SSHHHHHHH: ExpBur :-------------------------------------------------------------------------beeeebeeeebbbbbbbbbbbbbbeeb: Contact : b b queryA 303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402 : ** *** * * ** ***** * * **** * * * * : 8i9r_F_1 200:FGVARELMKYHSQT---YGVVIGGANRRAEAEKLGKGVNLLIATPGRLLDHLQNTPFVFKNLKSLIIDEADRILEIGFEDEMRQIVKILP----------: 286 SecStr :HHHHHHHTTS ---EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHHS TT EEEE SHHHHHHHT HHHHHHHTTTS ----------: ExpBur :ebbbebbbeebebe---ebbbbebeeeeebeeebeebbbbbbbbbebbbebbeebebeeeebebbbbbbbbbbbeeeeeeebeebbeebe----------: Contact : b bb b b b queryA 403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK: 502 : * * * * ** * * * * * * * * ** * *: 8i9r_F_1 287:--------------KEDRQTMLFSATQTTKVEDLA----------------RISLRPGPLYINVDE-EKKYSTVEGLEQGYVVVEADKRFLLLFSF--LK: 353 SecStr :-------------- TT EEEEE SS HHHHHHH----------------HHHS SS EEE - SSS EEEEE GGGHHHHHHHH--HH: ExpBur :--------------eeebbbbbbbeeeeeebeebb----------------eebbeeeeeebebee-eeeeeeeeebebbbbebebeebbbbbbbb--be: queryA 503:EHKMDQAIIFCRTKIDCDNLEQY--FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV: 600 : * * * * * * *** * * * ********** ** * ** * : 8i9r_F_1 354:KMAKKKIIVFFSS---CNSVKYYSELLQYIDLP--------VLDLHGKQKQQKRTNTFFEFCNAKSGTLICTDVAARGLDIPQVDWIVQFDPPDDPRDYI: 442 SecStr :HT SSEEEEEES ---HHHHHHHHHHHHHTT -------- EEE TTS HHHHHHHHHHHHH SSEEEEEEHHHHHTS SEEEE S SSHHHHH: ExpBur :ebeeebbbbbbbb---bbbbebbbebbeebebe--------eeebbeebebeebeebbeebeeeeeebbbbbbbebbeeebeebebbbbbbbbbbbeebb: Contact : bb b queryA 601:HRIGRVGR: 608 :** ** *: 8i9r_F_1 443:HRVGRTAR: 450 SecStr :HHHHHHHH: ExpBur :eebbeebe: |