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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | F 1 (CE) | polymer(polypeptide(L)) [463 aa] | RNA helicase :G0RYU9_CHATD | |
2 | b | J 1 (CR) | polymer(polypeptide(L)) [167 aa] | Nucleolar protein 16 :G0S832_CHATD | 280T(L) 281K(R) 282F 283L(K) 285N 363Q(N) 365R(K) 528Q 529Q(Y) (identity: 33.3 %/33.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8i9p_F_1 identity=33.9% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :*** * ** * ** ** * * *** ** ****** ** ** : 8i9p_F_1 113:FSELNLSEKTTKAIAEMGFTKMTEIQRRAIPPALAGKDVLGAAKTGSGKTLAFLIPAVEML---------------------------------------: 173 SecStr :TTSS HHHHHHHHHHT B HHHHHHHHHHHTT EEE TTSSHHHHHHHHHHHHH---------------------------------------: ExpBur :beebebeeebeebbeebeeeebeebbeebbeebeeeebbbbbbeeebebbbbbbbbbbbbb---------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 8i9p_F_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQT: 302 : * * * * * * **** * : 8i9p_F_1 173:-------------------------------------------------------------------------LSSLRFKPRNGTGAIVVTPTRELALQI: 199 SecStr :-------------------------------------------------------------------------HHHTT GGG SEEEE SSHHHHHHH: ExpBur :-------------------------------------------------------------------------beeeebeeeebbbbbbbbbbbbbbeeb: Contact : bbbb bb queryA 303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402 : ** *** * * ** ***** * * **** * * * * : 8i9p_F_1 200:FGVARELMKYHSQT---YGVVIGGANRRAEAEKLGKGVNLLIATPGRLLDHLQNTPFVFKNLKSLIIDEADRILEIGFEDEMRQIVKILP----------: 286 SecStr :HHHHHHHTSS ---EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHHS TT EEEE HHHHHHHT HHHHHHHHHHS ----------: ExpBur :ebbbebbbeebebe---ebbbbebeeeeebeeebeebbbbbbbbbebbbebbeebebeeeebebbbbbbbbbbbeeebeeebeebbeebe----------: Contact : b b queryA 403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK: 502 : * * * * ** * * * * * * * * ** * *: 8i9p_F_1 287:--------------KEDRQTMLFSATQTTKVEDLA----------------RISLRPGPLYINVDE-EKKYSTVEGLEQGYVVVEADKRFLLLFSF--LK: 353 SecStr :-------------- TT EEEEE SS HHHHHHH----------------HHHS SS EE -S SSS EEEEE GGGHHHHHHHH--HH: ExpBur :--------------eeebbbbbbbeeeeeebeebb----------------eebbeeeeeebebee-eeeeeeeeebebbbbebebeebbbbbbbb--be: queryA 503:EHKMDQAIIFCRTKIDCDNLEQY--FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV: 600 : * * * * * * *** * * * ********** ** * ** * : 8i9p_F_1 354:KMAKKKIIVFFSS---CNSVKYYSELLQYIDLP--------VLDLHGKQKQQKRTNTFFEFCNAKSGTLICTDVAARGLDIPQVDWIVQFDPPDDPRDYI: 442 SecStr :HS SSEEEEEES ---HHHHHHHHHHHHHTT -------- EEE TTS HHHHHHHHHHHHT SSEEEEEETTTSTTS SEEEE S SSHHHHH: ExpBur :ebeeebbbbbbbb---bbbbbbbbebbeebebe--------eebbbeebebeebeebbeebeeeeeebbbbbbbebbeeebeebebbbbbbbbbebeebb: Contact : b bb queryA 601:HRIGRVGR: 608 :** ** *: 8i9p_F_1 443:HRVGRTAR: 450 SecStr :HHHHHHHH: ExpBur :bebbeebe: |