Protein Model on 8i9p_F_1_CA_1 (TEMPLATE: 8i9p )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) F 1 (CE) polymer(polypeptide(L)) [463 aa] RNA helicase :G0RYU9_CHATD
2 b CA 1 (Li) polymer(polypeptide(L)) [88 aa] 60S ribosomal protein L36 :G0SBN1_CHATD 358K(P) 359L(F) (identity: 0.0 %/33.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8i9p_F_1 identity=33.9%
queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :***         *  **     * **   **  * * *** ** ****** ** **                                            :
8i9p_F_1     113:FSELNLSEKTTKAIAEMGFTKMTEIQRRAIPPALAGKDVLGAAKTGSGKTLAFLIPAVEML---------------------------------------: 173
SecStr          :TTSS   HHHHHHHHHHT  B  HHHHHHHHHHHTT  EEE   TTSSHHHHHHHHHHHHH---------------------------------------:    
ExpBur          :beebebeeebeebbeebeeeebeebbeebbeebeeeebbbbbbeeebebbbbbbbbbbbbb---------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
8i9p_F_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQT: 302
                :                                                                              * * *   *  * * **** * :
8i9p_F_1     173:-------------------------------------------------------------------------LSSLRFKPRNGTGAIVVTPTRELALQI: 199
SecStr          :-------------------------------------------------------------------------HHHTT  GGG  SEEEE SSHHHHHHH:    
ExpBur          :-------------------------------------------------------------------------beeeebeeeebbbbbbbbbbbbbbeeb:    

queryA       303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402
                :        **           ***   *     *  **     ***** *              *  ****  *  *  *         *          :
8i9p_F_1     200:FGVARELMKYHSQT---YGVVIGGANRRAEAEKLGKGVNLLIATPGRLLDHLQNTPFVFKNLKSLIIDEADRILEIGFEDEMRQIVKILP----------: 286
SecStr          :HHHHHHHTSS    ---EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHHS    TT  EEEE  HHHHHHHT HHHHHHHHHHS ----------:    
ExpBur          :ebbbebbbeebebe---ebbbbebeeeeebeeebeebbbbbbbbbebbbebbeebebeeeebebbbbbbbbbbbeeebeeebeebbeebe----------:    
Contact         :                                                       bb                                           

queryA       403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK: 502
                :              *     * *      * **                  *   * *   *  *    *  *  *        ** *           *:
8i9p_F_1     287:--------------KEDRQTMLFSATQTTKVEDLA----------------RISLRPGPLYINVDE-EKKYSTVEGLEQGYVVVEADKRFLLLFSF--LK: 353
SecStr          :-------------- TT EEEEE SS  HHHHHHH----------------HHHS SS  EE    -S     SSS  EEEEE  GGGHHHHHHHH--HH:    
ExpBur          :--------------eeebbbbbbbeeeeeebeebb----------------eebbeeeeeebebee-eeeeeeeeebebbbbebebeebbbbbbbb--be:    

queryA       503:EHKMDQAIIFCRTKIDCDNLEQY--FIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV: 600
                :       * *      *     *    *    *           ***  *   *      *       ********** **  *        **    * :
8i9p_F_1     354:KMAKKKIIVFFSS---CNSVKYYSELLQYIDLP--------VLDLHGKQKQQKRTNTFFEFCNAKSGTLICTDVAARGLDIPQVDWIVQFDPPDDPRDYI: 442
SecStr          :HS SSEEEEEES ---HHHHHHHHHHHHHTT  -------- EEE TTS HHHHHHHHHHHHT SSEEEEEETTTSTTS     SEEEE S  SSHHHHH:    
ExpBur          :ebeeebbbbbbbb---bbbbbbbbebbeebebe--------eebbbeebebeebeebbeebeeeeeebbbbbbbebbeeebeebebbbbbbbbbebeebb:    

queryA       601:HRIGRVGR: 608
                :** **  *:
8i9p_F_1     443:HRVGRTAR: 450
SecStr          :HHHHHHHH:    
ExpBur          :bebbeebe:

Input Residue Numbers for Focused Sites

ex) 2,15,123