Protein Model on 8huj_A_1_B_1 (TEMPLATE: 8huj )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) A 1 (A) polymer(polypeptide(L)) [383 aa] Eukaryotic initiation factor 4A-I :IF4A1_HUMAN
2 b B 1 (B) polymer(polypeptide(L)) [238 aa] Eukaryotic translation initiation factor 4 gamma 1 :IF4G1_HUMAN 312Y 496Y 497A(E) 498V(T) 499R(L) 500A(T) 501I 502K(T) 508Q 539Q(D) 540F 541S(T) 564G 565D(S) 567R 612M(K) (identity: 43.8 %/33.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8huj_A_1 identity=33.9%
queryA       249:FPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTP: 347
                : *   *      *  *   *          *      *  **   * **** *          *           ***   *     *      * ****:
8huj_A_1      86:LPCIKGYDVIAQAQSG-TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHA---CIGGTNVRAEVQKLQMEAPHIIVGTP: 181
SecStr          :HHHHHT  EEEE  TT-SSHHHHHHHHHHHHS SSS S  EEEE SSSHHHHHHHHHHHHTTTTT   EEE---  SSS HHHHHHHHHH   SEEE  H:    
ExpBur          :ebbeeeebbbbbbeee-ebbbbbbbbbbbeebeeeeebbbbbbbbbeeeebeebbeebeebbeebeebbbb---beeeeeeeebeeebeeebbbbbbbbb:    
Contact         :                                                               b                                    

queryA       348:GRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVP: 447
                :**  *      *        ******  ** *  * *          *      **   ***  * **     * *  *     * *             :
8huj_A_1     182:GRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT------QVVLLSATMPS-DVLEVTKKFMRDPIRILVKKEELTLEGIRQFYIN: 274
SecStr          :HHHHHHHTTTSS SSS  EEEEE HHHHHHHT HHHHHHHHHHS SS ------EEEEEESS  H-HHHHHHHHHSSS EEEE       GGGSEEEEE :    
ExpBur          :bbbeebbeeebbeeeebebbbbbbbbebbeeeeeebbeebbeebeeeb------bbbbbbbeeee-ebeebbeebbeeebebebeeeeeebeebebbbbe:    

queryA       448:VNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHG: 547
                :*        **                        * *      *   *    *      ** **  *    * *                 *     **:
8huj_A_1     275:V--------ER------------------------EEWK--LDTLCDLYETLTIT-----QAVIFINTRRKVDWLTEKM---------HARDFTVSAMHG: 326
SecStr          : --------  ------------------------TTHH--HHHHHHHHHSS  S----- EEEE SSSHHHHHHHHHH---------HHTT   EE  T:    
ExpBur          :b--------ee------------------------eeeb--bebbbebeeebebe-----bbbbbbeeeebbeebbeeb---------eeeeeebbbbee:    
Contact         :                                                bbbbbbb     b                              bbb      

queryA       548:DRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
                :*    **      *  *  * ** **  *****   *  ***  **    ** ***** **  * * **  *  *                ***   *:
8huj_A_1     327:DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDI-----ETFYNTSIEE: 419
SecStr          :T  SHHHHHHHHHHHHTS SEEEE HHHHHHS     SEEEESS  SSTTHHHHHHTGGG TTSS EEEEE  GGGHHHHHHH-----HHHTT   EE:    
ExpBur          :ebeeeebeebbeebeeeebebbbbbbebbeeeebeebebbbbbbbbeeeebbbebbbbeeebbeebbbbbbbbeeeeeebeeb-----eeebeeebee:    
Contact         :                bb b                                            b

Input Residue Numbers for Focused Sites

ex) 2,15,123