[pdbjlvh2]Protein Model on 8fkx_YA_1_E

Protein Model on 8fkx_YA_1_E_1 (TEMPLATE: 8fkx )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	YA 1 (SW)	polymer(polypeptide(L)) [444 aa]	ATP-dependent RNA helicase DDX18 :DDX18_HUMAN
2	b		E 1 (L3)	polymer(polyribonucleotide)	28S rRNA	335V(K) (identity: 0.0 %/38.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8fkx_YA_1 identity=38.7%

queryA        15:QAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR: 114
                : *  **     * **  **   * * * * ** ****** ** **                                                       :
8fkx_YA_1    192:KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELI--------------------------------------------------: 241
SecStr          :HHHHHHT  B  HHHHHHHHHHHHT  EEEE  TTSSHHHHHHHHHHHHH--------------------------------------------------:    
ExpBur          :ebbeebeeeebeebbbebbebbbeeebbebbbebeeebbbbbbbbbbbbb--------------------------------------------------:    

queryA       115:EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGL: 214
                :                                                                                                    :
8fkx_YA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       215:AFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYI: 313
                :                                                                   * * *    **  * **** **    *      :
8fkx_YA_1    241:--------------------------------------------------------------IVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHH: 278
SecStr          :--------------------------------------------------------------HHHTT  GGG  SEEEE SSHHHHHHHHHHHHHHGGG :    
ExpBur          :--------------------------------------------------------------beeeebeeeebbbbbbbbbbebbbbbbbbbbebbbeeb:    

queryA       314:DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS: 412
                :        ** **         * **  * * **** **    *          ** ****  *  *            *       * *    ***   :
8fkx_YA_1    279:VHTYG---LIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT------RRQTMLFSAT---: 366
SecStr          :   EE---EE TTS HHHHHHHHHH  SEEEE HHHHHHHHHH TT   TT  EEEE SHHHHHHHTTHHHHHHHHHHS S------SSEEEEEESS---:    
ExpBur          :ebeeb---ebbeeeeeeebeeebeebbbbbbbbbebbbebbeebeebeeeebebbbbbbbbbbbeeeebeebeebbeebee------ebbbbbbbbe---:    
Contact         :                     b                                                                              

queryA       413:FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF: 512
                :                                                                                                    :
8fkx_YA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       513:CRTKIDCDNLEQYFIQQGGGPDKKGHQFS-----------------------------------------------------------------------: 541
                :                                                                                                    :
8fkx_YA_1    367:-----------------------------QTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMS: 437
SecStr          :-----------------------------  HHHHHHHHHHS SS EEEE          TT EEEEEE  STTHHHHHHHHHHHSSSSEEEEEESSHHH:    
ExpBur          :-----------------------------eeeebeebbeebbeeeeeebebeeeeeeeeeeebebbbbebebeebbbbbbbbbeeeeeebbbbbbbbbbb:    

queryA       542:---------------CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR: 605
                :                   **  *   *      *   *   * ******** **  *        **    * ** **:
8fkx_YA_1    438:VKYHYELLNYIDLP-VLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGR: 515
SecStr          :HHHHHHHHHHTT  - EEE TTS HHHHHHHHHHHHH SSEEEEEEHHHHTT    S SEEEE S  SSHHHHHHHHHH:    
ExpBur          :bebbeebbeeeebe-bebbbbebebeebeebbeebeeeeeebbbbbbbbbbeeebbebebbbbbbbbbebebbbebbbe:

Protein Model on 8fkx_YA_1_E_1 (TEMPLATE: 8fkx )

Input Residue Numbers for Focused Sites