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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | DA 1 (NI) | polymer(polypeptide(L)) [612 aa] | ATP-dependent RNA helicase DDX54 :DDX54_HUMAN | |
2 | b | E 1 (L3) | polymer(polyribonucleotide) | 28S rRNA | 297E 326G 328A(R) 349R 352D(H) 622E(D) 625K(P) (identity: 42.9 %/34.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8fkx_DA_1 identity=34.9% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :* ** ** ** ** ** * ** * ****** * * : 8fkx_DA_1 98:FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFE-----------------------------------------: 156 SecStr :HHHHT HHHHHHHHHHT S HHHHHHHHHHHHT EEEE TTS HHHHHHHHHHH-----------------------------------------: ExpBur :beebebeeebeebbeeeeeeebeebbeebbeebeeeebbbbbbeeebebebbbbbbbbe-----------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 8fkx_DA_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-----------KALIV: 292 : *** : 8fkx_DA_1 157:------------------------------------------------------------------------------------RLKTHSAQTGARALIL: 172 SecStr :------------------------------------------------------------------------------------HH S SSS SEEEE: ExpBur :------------------------------------------------------------------------------------ebeeeeeeeebbbbbb: queryA 293:EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP: 392 : * **** *** * * * ** ** ** * ** ***** * * * * **** * * *: 8fkx_DA_1 173:SPTRELALQTLKFTKELGKFTG---LKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLP: 269 SecStr : SSHHHHHHHHHHHHHHTTTT --- EEEE TTS HHHHHHHHHT SEEEE HHHHHHHHHHHT TT EEEEETHHHHHHTTTHHHHHHHHHHS : ExpBur :bbeeebbeebbeebeebbeebe---beebebbeebebeebbeebeebbbbbbbbbebbbebbbbbeeebebbebbbbbbbbebbbeeebebbeebeeebe: Contact : b b b b b queryA 393:QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL: 492 : * * **** * * * * * * * ** : 8fkx_DA_1 270:----GGH--QTVLFSATLPKLLVE-FARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDT--------KAAVLLHLLH--NVVRP---------------: 337 SecStr :----TT --EEEEEESSB HHHHH-HHHHH SS EEE HHHHS TT EEEEEE GGG--------HHHHHHHHHH--TTS T---------------: ExpBur :----eeb--bbbbbbbbbbeebbe-bbeeebeeeebbebeeeeebeeebebbbbbbeeeb--------bbbbbbbbbe--eebee---------------: queryA 493:KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL: 592 : ** * ** * * ** * ** ** * * ** ** **** ** *** : 8fkx_DA_1 338:-------------QDQTVVFVATKHHAEYLTELLTTQ---------RVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSF: 415 SecStr :-------------TS EEEEESSHHHHHHHHHHHHHT---------T EEEE TTS HHHHHHHHHHHHTTS SEEEEEHHHHTT SEEEESS : ExpBur :-------------ebbbbbbbbbbbbbebbbebbeeb---------ebebbebbeebeeeeeeebbeebeeeebebbbbbbbbbbebebeebbbbbbbbb: queryA 593:PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR-LKEDGGC: 649 :* ** *** ** * * * **** * * *** * : 8fkx_DA_1 416:PAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLARPLKEPSGV: 473 SecStr : SSHHHHHHHGGGT BTTB EEEEEE GGGHHHHHHHHHHHT EE SSS SH: ExpBur :bbebebbbebbeebeeeeeebbbbbbbbeebbbbbbbbbeeeeeeeeebeeeeebeee: Contact : b b |