Protein Model on 8fkv_CA_1_E_1 (TEMPLATE: 8fkv )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) CA 1 (NI) polymer(polypeptide(L)) [647 aa] ATP-dependent RNA helicase DDX54 :DDX54_HUMAN
2 b E 1 (L3) polymer(polyribonucleotide) 28S rRNA 297E 326G 327V(D) 328A(R) 329A(M) 349R 352D(H) 622E(D) 625K(P) (identity: 33.3 %/34.9 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8fkv_CA_1 identity=34.9%
queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*  **                ** **   ** ** * **   * ******  *  *                                            :
8fkv_CA_1     98:FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFE-----------------------------------------: 156
SecStr          :HHHHT  HHHHHHHHHHT  S  HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHH-----------------------------------------:    
ExpBur          :beebebeeebeebbeeeeeeebeebbeebbeebeeeebbbbbbeeebebebbbbbbbbe-----------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
8fkv_CA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-----------KALIV: 292
                :                                                                                                *** :
8fkv_CA_1    157:------------------------------------------------------------------------------------RLKTHSAQTGARALIL: 172
SecStr          :------------------------------------------------------------------------------------HS S  SSSS SEEEE:    
ExpBur          :------------------------------------------------------------------------------------ebeeeeeeeebbbbbb:    

queryA       293:EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP: 392
                : * **** ***   *   *      *   ** **    **   *    **   *****        * *  *   * **** *   *            *:
8fkv_CA_1    173:SPTRELALQTLKFTKELGKFTG---LKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLP: 269
SecStr          : SSHHHHHHHHHHHHHHTTTT ---  EEEE TTS HHHHHHHHTT  SEEEE HHHHHHHHHHHT   TT  EEEEETHHHHHHTT HHHHHHHHHHS :    
ExpBur          :bbbeebbeebbeebeebbeebe---beebebbeeeebeebbeebeeebbbbbbbbebbbebbbbbeeebeebebbbbbbbbbbbeeebbebbeebeeebe:    
Contact         :    b                            bbbb                   b  b                                        

queryA       393:QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL: 492
                :     *   *    ****    *          *    *                *   *        *        *     **               :
8fkv_CA_1    270:----GGH--QTVLFSATLPKLLVE-FARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDT--------KAAVLLHLLH--NVVRP---------------: 337
SecStr          :----TT --EEEEEESSB HHHHH-HHHHHSSS EEEE HHHHS  TT EEEEEE  GGG--------HHHHHHHHHH--TTS T---------------:    
ExpBur          :----eeb--bbbbbbbbbbebbbe-bbeeebeebebbebeeeeebeeebebbbbbbeeeb--------bbbbbbbbbe--eebee---------------:    

queryA       493:KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL: 592
                :              **   *  **     *      *           **        *  ** **  *  *    ** ** **** **     ***   :
8fkv_CA_1    338:-------------QDQTVVFVATKHHAEYLTELLTTQ---------RVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSF: 415
SecStr          :-------------TS EEEEESSHHHHHHHHHHHHHT---------T  EEEE TTS HHHHHHHHHHHHHTS SEEEEEHHHHTTS     SEEEESS :    
ExpBur          :-------------ebbbbbbbbbbebbebbbebbeeb---------ebebbebbeebeeeeeeebbeebeeeebebbbbbbbbbbebebbebbbbbbbbb:    

queryA       593:PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR-LKEDGGC: 649
                :*       ** *** ** * * * ****              *      * ***  * :
8fkv_CA_1    416:PAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLARPLKEPSGV: 473
SecStr          : SSHHHHHHHTTTT BTTB  EEEEEE GGGHHHHHHHHHHHT   EE  SSS    H:    
ExpBur          :bbebebbbebbeebeeeeeebbbbbbbbeebbbbbbebbeeeeeeeeebeeeeeeeee:    
Contact         :                             b  b

Input Residue Numbers for Focused Sites

ex) 2,15,123