[pdbjlvh2]Protein Model on 8fkv_BB_1_E

Protein Model on 8fkv_BB_1_E_1 (TEMPLATE: 8fkv )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	BB 1 (SW)	polymer(polypeptide(L)) [444 aa]	ATP-dependent RNA helicase DDX18 :DDX18_HUMAN
2	b		E 1 (L3)	polymer(polyribonucleotide)	28S rRNA	335V(K) (identity: 0.0 %/38.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8fkv_BB_1 identity=38.7%

queryA        15:QAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR: 114
                : *  **     * **  **   * * * * ** ****** ** **                                                       :
8fkv_BB_1    192:KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELI--------------------------------------------------: 241
SecStr          :HHHHHHT  B  HHHHHHHHHHHHT  EEEE  TTSSHHHHHHHHHHHHH--------------------------------------------------:    
ExpBur          :ebbeebeeeebeebbbebbebbeeeebbbbbbebeeebbbbbbbbbbbbb--------------------------------------------------:    

queryA       115:EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGL: 214
                :                                                                                                    :
8fkv_BB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       215:AFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYI: 313
                :                                                                   * * *    **  * **** **    *      :
8fkv_BB_1    241:--------------------------------------------------------------IVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHH: 278
SecStr          :--------------------------------------------------------------HHHHT  TTT   EEEE SSHHHHHHHHHHHHHHGGG :    
ExpBur          :--------------------------------------------------------------beeeebeeeebbbbbbbbbbbbbbebbeebbebbbeeb:    

queryA       314:DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS: 412
                :        ** **         * **  * * **** **    *          ** ****  *  *            *       * *    ***   :
8fkv_BB_1    279:VHTYG---LIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT------RRQTMLFSAT---: 366
SecStr          : S EE---E  TTS HHHHHHHHHH  SEEEE HHHHHHHHHH TT   TT  EEEE SHHHHHHHT HHHHHHHHHHS S------S EEEEEESS---:    
ExpBur          :ebeeb---ebbeeeeeeebeeebeebbbbbbbbbebbbebbeebeebeeeebbbbbbbbbbbbbeeeeeeebeebbeebee------ebbbbbbbbe---:    
Contact         :                     b                                                                              

queryA       413:FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF: 512
                :                                                                                                    :
8fkv_BB_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       513:CRTKIDCDNLEQYFIQQGGGPDKKGHQFS-----------------------------------------------------------------------: 541
                :                                                                                                    :
8fkv_BB_1    367:-----------------------------QTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMS: 437
SecStr          :-----------------------------  HHHHHHHHHHS SS EEEE          TTSEEEEEE  STTHHHHHHHHHHHTTTSEEEEEESSHHH:    
ExpBur          :-----------------------------eeeebeebbeebbeeeeeebebeeeeeeeeeeebebbbbebebeebbbbbbbbbeebeeebbbbbbbbbbb:    

queryA       542:---------------CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR: 605
                :                   **  *   *      *   *   * ******** **  *        **    * ** **:
8fkv_BB_1    438:VKYHYELLNYIDLP-VLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGR: 515
SecStr          :HHHHHHHHHHTT  - EEE TTS HHHHHHHHHHHHH SSEEEEEEHHHHTT      SEEEE S  S HHHHHHHHHH:    
ExpBur          :bebbeebbeeeebe-bebbbbebebeebeebbeebeeeeeebbbbbbbbbbeeebbebebbbbbbbbebbebbbebbbe:

Protein Model on 8fkv_BB_1_E_1 (TEMPLATE: 8fkv )

Input Residue Numbers for Focused Sites