[pdbjlvh2]Protein Model on 8fku_BA_1_E

Protein Model on 8fku_BA_1_E_1 (TEMPLATE: 8fku )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	BA 1 (NI)	polymer(polypeptide(L)) [598 aa]	ATP-dependent RNA helicase DDX54 :DDX54_HUMAN
2	b		E 1 (L3)	polymer(polyribonucleotide)	28S rRNA	326G 327V(D) 329A(M) 352D(H) 622E(D) 625K(P) (identity: 16.7 %/34.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8fku_BA_1 identity=34.9%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :*  **                ** **   ** ** * **   * ******  *  *                                            :
8fku_BA_1     98:FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFE-----------------------------------------: 156
SecStr          :HHHHT  HHHHHHHHHHT  S  HHHHHHHHHHHTT  EEEE  TTS HHHHHHHHHHH-----------------------------------------:    
ExpBur          :eeeeeeeeebeebeeeeeeeeeeebbeebeeebeeeebbeeeeeeeeeeeebeeeebbe-----------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
8fku_BA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP-----------KALIV: 292
                :                                                                                                *** :
8fku_BA_1    157:------------------------------------------------------------------------------------RLKTHSAQTGARALIL: 172
SecStr          :------------------------------------------------------------------------------------HS S  SSSS SEEEE:    
ExpBur          :------------------------------------------------------------------------------------eeeeeeeeeeebeeee:    

queryA       293:EPSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIP: 392
                : * **** ***   *   *      *   ** **    **   *    **   *****        * *  *   * **** *   *            *:
8fku_BA_1    173:SPTRELALQTLKFTKELGKFTG---LKTALILGGDRMEDQFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLP: 269
SecStr          : SSHHHHHHHHHHHHHHTTTT ---  EEEE TTS HHHHHHHHTT  SEEEE HHHHHHHHHHHT   TT  EEEEETHHHHHHTTTHHHHHHHHHHS :    
ExpBur          :beeeeebeeeeeeeeeeeeebe---eeebebeeeeeeeebeeeeeeebbbebbbeebeeeeeeeeeeeeeebebebeeebbbbbeeebeebeeeeeeebe:    
Contact         :                                 bb b                      b                                        

queryA       393:QVTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKIL: 492
                :     *   *    ****    *          *    *                *   *        *        *     **               :
8fku_BA_1    270:----GGH--QTVLFSATLPKLLVE-FARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDT--------KAAVLLHLLH--NVVRP---------------: 337
SecStr          :----TT --EEEEEESSB HHHHH-HHHHH SS EEEE HHHHS  TT EEEEEE  STT--------HHHHHHHHHH--TTS T---------------:    
ExpBur          :----eeb--eeeebbeeeeeebee-eeeeebeeeeebeeeeeeebeeebebbbbbbeeeb--------bbbbbbbbbe--eebee---------------:    

queryA       493:KGEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTL: 592
                :              **   *  **     *      *           **        *  ** **  *  *    ** ** **** **     ***   :
8fku_BA_1    338:-------------QDQTVVFVATKHHAEYLTELLTTQ---------RVSCAHIYSALDPTARKINLAKFTLGKCSTLIVTDLAARGLDIPLLDNVINYSF: 415
SecStr          :-------------TS EEEEESSHHHHHHHHHHHHHT---------T  EEEE TTS HHHHHHHHHHHHHTS SEEEEEHHHHTTS     SEEEESS :    
ExpBur          :-------------ebbbbbbbbbeebbebbbebbeeb---------ebebbebbeebeeeeeeebbeebeeeebebbbbbbebbeebebbebbbbbbbbb:    

queryA       593:PDEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTR-LKEDGGC: 649
                :*       ** *** ** * * * ****              *      * ***  * :
8fku_BA_1    416:PAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLHLFLGRSLTLARPLKEPSGV: 473
SecStr          : SSHHHHHHHTGGG BTTB  EEEEEE GGGHHHHHHHHHHHT   EE  SSS    H:    
ExpBur          :bbebeebbebbeebeeeeeebbbbbbbbeebbbbbbebbeeeeeebeebeeeeeeeee:    
Contact         :                             b  b

Protein Model on 8fku_BA_1_E_1 (TEMPLATE: 8fku )

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