[pdbjlvh2]Protein Model on 8fkp_TA_1_LA

Protein Model on 8fkp_TA_1_LA_1 (TEMPLATE: 8fkp )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	TA 1 (SW)	polymer(polypeptide(L)) [445 aa]	ATP-dependent RNA helicase DDX18 :DDX18_HUMAN
2	b		LA 1 (SL)	polymer(polypeptide(L)) [243 aa]	Ribosomal L1 domain-containing protein 1 :RL1D1_HUMAN	586Y(W) (identity: 0.0 %/38.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8fkp_TA_1 identity=38.7%

queryA        15:QAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQSR: 114
                : *  **     * **  **   * * * * ** ****** ** **                                                       :
8fkp_TA_1    192:KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELI--------------------------------------------------: 241
SecStr          :HHHHHHT  B  HHHHHHHHHHHHT  EEEE  TTSSHHHHHHHHHHHHH--------------------------------------------------:    
ExpBur          :ebbeebeeeebeebbbebbebbeeeebbbbbbebeeebbbbbbbbbbbbb--------------------------------------------------:    

queryA       115:EVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDLGL: 214
                :                                                                                                    :
8fkp_TA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       215:AFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLP-NAPKALIVEPSRELAEQTLNNIKQFKKYI: 313
                :                                                                   * * *    **  * **** **    *      :
8fkp_TA_1    241:--------------------------------------------------------------IVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHH: 278
SecStr          :--------------------------------------------------------------HHHHT  TTT  SEEEE SSHHHHHHHHHHHHHHTTS :    
ExpBur          :--------------------------------------------------------------bbeeebeeeebbbbbbbbbbebbbbbbbbbbebbbeeb:    

queryA       314:DNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSATLHS: 412
                :        ** **         * **  * * **** **    *          ** ****  *  *            *       * *    ***   :
8fkp_TA_1    279:VHTYG---LIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT------RRQTMLFSAT---: 366
SecStr          :   EE---EE TTS HHHHHHHHHH  SEEEE HHHHHHHHHH TT   TT  EEEE  HHHHHHHTTHHHHHHHHHHS S------SSEEEEE SS---:    
ExpBur          :ebeeb---ebbeeeeeeebeeebeebbbbbbbbbeebbebbeebeebeeeebebbbbbbbbbbbeeeeeeebeebbeebee------ebbbbbbbbe---:    

queryA       413:FDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQAIIF: 512
                :                                                                                                    :
8fkp_TA_1     -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       513:CRTKIDCDNLEQYFIQQGGGPDKKGHQFS-----------------------------------------------------------------------: 541
                :                                                                                                    :
8fkp_TA_1    367:-----------------------------QTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMS: 437
SecStr          :-----------------------------  HHHHHHHHHHS SS EEEE          SS B  EEE  STTHHHHHHHHHHHTTTSEEEEEESSHHH:    
ExpBur          :-----------------------------eeeebeebbeebbeeeeeebebeeeeeeeeeeebebbbbebebeebbbbbbbbbeebeeebbbbbbbbbeb:    
Contact         :                                                                                bb bbb              

queryA       542:---------------CVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIGR: 605
                :                   **  *   *      *   *   * ******** **  *        **    * ** **:
8fkp_TA_1    438:VKYHYELLNYIDLP-VLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGR: 515
SecStr          :HHHHHHHHHHSS  - EEE TTS HHHHHHHHHHHHH SSEEEEEEHHHHTTS     SEEEE S  S HHHHHHHHHH:    
ExpBur          :bebbeebbeeeebe-bebbbbebebeebeebbeebeeeeeebbbbbbbbbbeeebbebbbbbbbbbbbbbebbeebbee:    
Contact         :                                                           b

Protein Model on 8fkp_TA_1_LA_1 (TEMPLATE: 8fkp )

Input Residue Numbers for Focused Sites