[pdbjlvh2]Protein Model on 8ev3_J_1_A

Protein Model on 8ev3_J_1_A_1 (TEMPLATE: 8ev3 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	J 1 (D)	polymer(polypeptide(L)) [416 aa]	RNA helicase :S6CCW7_SCHPM
2	b		A 1 (1)	polymer(polyribonucleotide)	RNA (1452-MER)	296R 300E(L) 320E(F) 327V(A) 328A(N) 330R 334S(D) 335V(K) 338N(K) 357G(K) 549R(Q) (identity: 18.2 %/39.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8ev3_J_1 identity=39.5%

queryA        13:IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ: 112
                :*  *  **     * **  ***  * * *** ** ****** ** ** *   *                                               :
8ev3_J_1     100:IQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLY-----------------------------------------------: 152
SecStr          :HHHHHHHTT  S  SGGGTTHHHHTTT  EEE   TTS HHHHTTHHHHHHHH-----------------------------------------------:    
ExpBur          :beebbeebeeeeeeebbebbbeebeeebbbebebeeeeebbbbbbbbbbebbe-----------------------------------------------:    

queryA       113:SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL: 212
                :                                                                                                    :
8ev3_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       213:GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT--KFLP-NAPKALIVEPSRELAEQTLNNIKQF: 309
                :                                                                      ** * *     *  * **** *     *  :
8ev3_J_1     153:--------------------------------------------------------------------ALKFKPRNGTGVIIISPTRELALQIFGVAKEL: 184
SecStr          :--------------------------------------------------------------------HHT  TTT   EEEE SSHHHHHHHHHHHHHH:    
ExpBur          :--------------------------------------------------------------------eeebeeeebbbbbbbbbbbbbbeebbbbbebb:    
Contact         :                                                                                      b   b         

queryA       310:KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA: 408
                : **           ***   *     *  **   * **** ** *  *        * ** ****  *  *  *         *   *            :
8ev3_J_1     185:LKYHHQT---FGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILP---SENRQTLLFSATQ: 278
SecStr          :TTT  S ---EEE  TTS HHHHHHHHHH  SEEEE HHHHHHHHHH TT   TT  EEEE SHHHHHHHT HHHHHHHHHHS --- TT EEEEE SS :    
ExpBur          :beebebe---ebbbbeeeeeeebbeebeebbbbbbbbbebbbebbeebeebeeeebebbbbbbbbbbbeeeeeeebeebbeebe---eeebbbbbbbeee:    
Contact         :          b      bb b   bb  b                   b                                                   

queryA       409:TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ: 508
                :*    *    * *                                                                                       :
8ev3_J_1     279:TTKVEDLARISLK---------------------------------------------------------------------------------------: 291
SecStr          : HHHHHHHHHHS ---------------------------------------------------------------------------------------:    
ExpBur          :eebbeebbeebbb---------------------------------------------------------------------------------------:    

queryA       509:AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC----------------------------------------------------------------: 544
                :                                                                                                    :
8ev3_J_1     292:------------------------------------PGPLYVNXXXXXXXXXXXXXEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAEL: 355
SecStr          :------------------------------------SS EE  -------------  EEEE  STTHHHHHHHHHHHTTTSEEEEEES HHHHHHHHHH:    
ExpBur          :------------------------------------eeeeebe-------------ebbbbebebeebbbbbbbbbeebeeebbbbbbbbbebbebbbeb:    

queryA       545:-----------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG: 604
                :           ***  *   *      *       * ** ***** **  *        **    * ** *:
8ev3_J_1     356:LNYIDLPVLD-LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG: 425
SecStr          :HHHTT   EE-S TTT HHHHHHHHHHHHHSSSEEEEEETTTTTT      SEEEE S  S HHHHHHHH :    
ExpBur          :beebebebeb-bbeeeeeeebeebbeebeeeeeebbbbbbbbbbeeeeeebebbbbbbbbbbbeebbeeee:    
Contact         :               b

Protein Model on 8ev3_J_1_A_1 (TEMPLATE: 8ev3 )

Input Residue Numbers for Focused Sites