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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | J 1 (D) | polymer(polypeptide(L)) [406 aa] | ATP-dependent RNA helicase has1 :HAS1_SCHPO | |
2 | b | Q 1 (L) | polymer(polypeptide(L)) [116 aa] | 60S ribosomal protein L13 :RL13_SCHPO | 362S(R) (identity: 0.0 %/39.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8euy_J_1 identity=39.4% |
queryA 13:IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ: 112 :* * ** * ** *** * * *** ** ****** ** ** * * : 8euy_J_1 100:IQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLY-----------------------------------------------: 152 SecStr :HHHHHHHHT S HHHHTTHHHHHTT EEE TTSSTHHHHHHHHHHHHH-----------------------------------------------: ExpBur :beebbeebeeeeeeebbeeeeeebeeebeeeeeeeeeeebeebbbebbbebbe-----------------------------------------------: queryA 113:SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL: 212 : : 8euy_J_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 213:GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT--KFLP-NAPKALIVEPSRELAEQTLNNIKQF: 309 : ** * * * * **** * * : 8euy_J_1 153:--------------------------------------------------------------------ALKFKPRNGTGVIIISPTRELALQIFGVAKEL: 184 SecStr :--------------------------------------------------------------------HHT GGG EEEE SSHHHHHHHHHHHHHH: ExpBur :--------------------------------------------------------------------eeebbeeebbbbbbbbbbbbbbeebebbbebb: queryA 310:KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA: 408 : ** *** * * ** * **** ** * * * ** **** * * * * * : 8euy_J_1 185:LKYHHQT---FGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILP---SENRQTLLFSATQ: 278 SecStr :TTT ---EEE TTS HHHHHHHHHH SEEEE HHHHHHHHHH TT TT EEEE HHHHHHHT HHHHHHHHHHS --- TT EEEEE SS : ExpBur :beebebe---ebbbbeeeeeeebbeebeebbbbbbbbbebbbebbeebeebeeeebbbbbbbbbebbeeeeeeebbeebbeebe---eeebbbbbbbeee: Contact : b queryA 409:TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ: 508 :* * * : 8euy_J_1 279:TTKVEDLARIS-----------------------------------------------------------------------------------------: 289 SecStr : HHHHHHHHH -----------------------------------------------------------------------------------------: ExpBur :eebbeebeeee-----------------------------------------------------------------------------------------: queryA 509:AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC----------------------------------------------------------------: 544 : : 8euy_J_1 290:------------------------------------XXXXXXXXXXXXXXXXXXXXXXEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMA: 353 SecStr :---------------------------------------------------------- EEEE GGGHHHHHHHHHHHTTTSEEEEEES HHHHHHHH: ExpBur :----------------------------------------------------------ebbbbebebeebbbbbbbbbeebeeebbbbbbbbbebbebbb: queryA 545:-------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG: 604 : *** * * * * ** ***** ** * ** * ** *: 8euy_J_1 354:ELLNYIDLPVLD-LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG: 425 SecStr :HHHHTTT EE-S TTS HHHHHHHHHHHHHSSSEEEEEEHHHHTTS SEEEE S S HHHHHHHH : ExpBur :ebbeebebebee-bbbeeeeeebeebbeebeeeeebbbbbbbbbbbeeeeeebebebbbbbbbebeebeeeee: |