[pdbjlvh2]Protein Model on 8euy_J_1_A

Protein Model on 8euy_J_1_A_1 (TEMPLATE: 8euy )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	J 1 (D)	polymer(polypeptide(L)) [406 aa]	ATP-dependent RNA helicase has1 :HAS1_SCHPO
2	b		A 1 (1)	polymer(polyribonucleotide)	RNA (1095-MER)	300E(L) 327V(A) 328A(N) 330R 335V(K) 338N(K) (identity: 16.7 %/39.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8euy_J_1 identity=39.4%

queryA        13:IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ: 112
                :*  *  **     * **  ***  * * *** ** ****** ** ** *   *                                               :
8euy_J_1     100:IQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLY-----------------------------------------------: 152
SecStr          :HHHHHHHHT  S  HHHHTTHHHHHTT  EEE   TTSSTHHHHHHHHHHHHH-----------------------------------------------:    
ExpBur          :beebbeebeeeeeeebbeeeeeebeeebeeeeeeeeeeebeebbbebbbebbe-----------------------------------------------:    

queryA       113:SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL: 212
                :                                                                                                    :
8euy_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       213:GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT--KFLP-NAPKALIVEPSRELAEQTLNNIKQF: 309
                :                                                                      ** * *     *  * **** *     *  :
8euy_J_1     153:--------------------------------------------------------------------ALKFKPRNGTGVIIISPTRELALQIFGVAKEL: 184
SecStr          :--------------------------------------------------------------------HHT  GGG   EEEE SSHHHHHHHHHHHHHH:    
ExpBur          :--------------------------------------------------------------------eeebbeeebbbbbbbbbbbbbbeebebbbebb:    
Contact         :                                                                                          b         

queryA       310:KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA: 408
                : **           ***   *     *  **   * **** ** *  *        * ** ****  *  *  *         *   *            :
8euy_J_1     185:LKYHHQT---FGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILP---SENRQTLLFSATQ: 278
SecStr          :TTT    ---EEE  TTS HHHHHHHHHH  SEEEE HHHHHHHHHH TT   TT  EEEE  HHHHHHHT HHHHHHHHHHS --- TT EEEEE SS :    
ExpBur          :beebebe---ebbbbeeeeeeebbeebeebbbbbbbbbebbbebbeebeebeeeebbbbbbbbbebbeeeeeeebbeebbeebe---eeebbbbbbbeee:    
Contact         :                 bb b    b  b                                                                       

queryA       409:TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ: 508
                :*    *    *                                                                                         :
8euy_J_1     279:TTKVEDLARIS-----------------------------------------------------------------------------------------: 289
SecStr          : HHHHHHHHH -----------------------------------------------------------------------------------------:    
ExpBur          :eebbeebeeee-----------------------------------------------------------------------------------------:    

queryA       509:AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC----------------------------------------------------------------: 544
                :                                                                                                    :
8euy_J_1     290:------------------------------------XXXXXXXXXXXXXXXXXXXXXXEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMA: 353
SecStr          :----------------------------------------------------------  EEEE  GGGHHHHHHHHHHHTTTSEEEEEES HHHHHHHH:    
ExpBur          :----------------------------------------------------------ebbbbebebeebbbbbbbbbeebeeebbbbbbbbbebbebbb:    

queryA       545:-------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG: 604
                :             ***  *   *      *       * ** ***** **  *        **    * ** *:
8euy_J_1     354:ELLNYIDLPVLD-LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG: 425
SecStr          :HHHHTTT   EE-S TTS HHHHHHHHHHHHHSSSEEEEEEHHHHTTS     SEEEE S  S HHHHHHHH :    
ExpBur          :ebbeebebebee-bbbeeeeeebeebbeebeeeeebbbbbbbbbbbeeeeeebebebbbbbbbebeebeeeee:

Protein Model on 8euy_J_1_A_1 (TEMPLATE: 8euy )

Input Residue Numbers for Focused Sites