[pdbjlvh2]Protein Model on 8eup_J_1_A

Protein Model on 8eup_J_1_A_1 (TEMPLATE: 8eup )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	J 1 (D)	polymer(polypeptide(L)) [400 aa]	RNA helicase :S6CCW7_SCHPM
2	b		A 1 (1)	polymer(polyribonucleotide)	RNA (1422-MER)	303L(F) 307K 327V(A) 328A(N) 330R 331D(A) 335V(K) (identity: 28.6 %/41.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8eup_J_1 identity=41.4%

queryA        13:IAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLCCQ: 112
                :*  *  **     * **  ***  * * ***  * ****** ** ** *   *                                               :
8eup_J_1     100:IQKAIKEMGFETMTEIQKRSIPPLLAGRDVLXXAKTGSGKTLAFLIPTIEMLY-----------------------------------------------: 152
SecStr          :HHHHHHHTT  S  HHHHHHHHHHTT   B --  TTSSHHHHTTHHHHHHHH-----------------------------------------------:    
ExpBur          :beebbeebebeeeeeebeeebeebeeeeeee--eeeeeebbebbbebbbeebe-----------------------------------------------:    

queryA       113:SREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGKDL: 212
                :                                                                                                    :
8eup_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       213:GLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT--KFLP-NAPKALIVEPSRELAEQTLNNIKQF: 309
                :                                                                      ** * *     *  * **** *     *  :
8eup_J_1     153:--------------------------------------------------------------------ALKFKPRNGTGVIIISPTRELALQIFGVAKEL: 184
SecStr          :--------------------------------------------------------------------HHT  STT   EEEE SSHHHHHHHHHHHHHH:    
ExpBur          :--------------------------------------------------------------------eeebeeeebbbbbbbbbbbbbbeebebbbebb:    
Contact         :                                                                                             b   b  

queryA       310:KKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQVIVCSA: 408
                : **           ***   *     *  **   * **** ** *  *        * ** ****  *  *  *         *                :
8eup_J_1     185:LKYHHQT---FGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILP----------------: 265
SecStr          :TTTSSS ---EEEE TTS TTTTTHHHHTT  EEEE HHHHHHHHHH SS   S   EEEE  HHHHHHHT HHHHHHHHHHS ----------------:    
ExpBur          :beebebe---ebbbbeeeeeeebbeebeebbbbbbbbbebbbbbbeebeebeeeebebbbbbbbebbeeeebeebbeebbeebb----------------:    
Contact         :                 bb bb   b                                                                          

queryA       409:TLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKEHKMDQ: 508
                :                                                                                                    :
8eup_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       509:AIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC----------------------------------------------------------------: 544
                :                                                                                                    :
8eup_J_1     266:------------------------------------SENRQTLLFXXXXXXKVEDLARISXXXXXXXXXXXXXXXXXXXXXXEQGYVVVDSDKRFLLLFS: 329
SecStr          :------------------------------------ TT EEEE ------ HHHHHHT ----------------------  EEEE  HHHHHHHHHH:    
ExpBur          :------------------------------------eeebbbbbe------eeeebeeee----------------------ebbbbebebbebbbbbbb:    

queryA       545:-------------------------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG: 604
                :                                     ***  *   *      *       * ** ***** **  *        **    * ** *:
8eup_J_1     330:FLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLD-LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG: 425
SecStr          :HHHHTTTSEEEEEES HHHHHHHHHHHHHTT   EE-S TTT HHHHHHHHHHHHH SSEEEEEETTTSTTS     SEEEE S  S HHHHHHHH :    
ExpBur          :ebeebeeebbbbbbbbbebbebbbebbeeeebebeb-bbeebebeebeebeeebeeeeeebbbbbbbbbbeeeeeebebbbbbbbbbbbeebeeeee:

Protein Model on 8eup_J_1_A_1 (TEMPLATE: 8eup )

Input Residue Numbers for Focused Sites