[pdbjlvh2]Protein Model on 8eth_J_1_A

Protein Model on 8eth_J_1_A_1 (TEMPLATE: 8eth )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	J 1 (D)	polymer(polypeptide(L)) [422 aa]	ATP-dependent RNA helicase has1 :HAS1_SCHPO
2	b		A 1 (1)	polymer(polyribonucleotide)	RNA (1263-MER)	300E(L) 327V(A) 328A(N) 330R 331D(A) 335V(K) 338N(K) 357G(K) (identity: 12.5 %/38.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8eth_J_1 identity=38.9%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :**       *  *  **     * **  ***  * * *** ** ****** ** ** *   *                                      :
8eth_J_1      91:FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLY--------------------------------------: 152
SecStr          :TTTS   HHHHHHHHHHS S   HHHHTTHHHHHHT  EEE   TTSSHHHHTTHHHHHHHH--------------------------------------:    
ExpBur          :beeeebbeebeebbeebeeeeeeebbeebbeebeeeebbebebeeeeebeebbbbbbbbbbe--------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
8eth_J_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT---KFLP-NAPKALIVEPSRELA: 299
                :                                                                                ** * *     *  * ****:
8eth_J_1     153:-----------------------------------------------------------------------------AL-KFKPRNGTGVIIISPTRELA: 174
SecStr          :-----------------------------------------------------------------------------HH-T  GGG  SEEEE SSHHHH:    
ExpBur          :-----------------------------------------------------------------------------ee-ebeeeebbbbbbbbbbbbbb:    

queryA       300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG: 398
                : *     *   **           ***   *     *  **   * **** ** *  *        * ** ****  *  *  *         *   *  :
8eth_J_1     175:LQIFGVAKELLKYHHQT---FGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILP---SEN: 268
SecStr          :HHHHHHHHHHTTSS   ---EEEE TTS HHHHHHHHTT  SEEEE HHHHHHHHHH TT   TT  EEEE  HHHHHHHT HHHHHHHHHHS --- TT:    
ExpBur          :ebbbbbbebbbeebebe---ebbbbeeeeeeebbeebeebbbbbbbbbebbbebbeebeebeeeebebbbbbbbebbeebeeeebbeebbeebe---eee:    
Contact         :b                          bb bb   b  b                   b                                         

queryA       399:KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV: 498
                :          *    *    * *                                                                             :
8eth_J_1     269:RQTLLFSATQTTKVEDLARISLK-----------------------------------------------------------------------------: 291
SecStr          : EEEEE S   HHHHHHHHHHS -----------------------------------------------------------------------------:    
ExpBur          :bbbbbbbeeeeeebeeebeebbe-----------------------------------------------------------------------------:    

queryA       499:RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC------------------------------------------------------: 544
                :                                                                                                    :
8eth_J_1     292:----------------------------------------------PGPLYVXXXXXXXXXXXXXXEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSS: 345
SecStr          :----------------------------------------------SS EE --------------  EEEE  GGGHHHHHHHHHHHTTTSEEEEEES :    
ExpBur          :----------------------------------------------eeeeee--------------ebbbbebebbebbbbbbbbbeebeeebbbbbbbb:    

queryA       545:---------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG: 604
                :                     ***  *   *      *       * ** ***** **  *        **    * ** *:
8eth_J_1     346:CASVKYMAELLNYIDLPVLD-LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG: 425
SecStr          :HHHHHHHHHHHHHTT   EE-S TTS HHHHHHHHHHHHH SSEEEEEEHHHHTTS   S SEEEE S  S HHHHHHHH :    
ExpBur          :bebbebbbebbeeeebebeb-bbbeeeeeebeebbeebeeeeeebbbbbbbbbbeeeeeebebbbbbbbbbbbeebeeeee:

Protein Model on 8eth_J_1_A_1 (TEMPLATE: 8eth )

Input Residue Numbers for Focused Sites