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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | J 1 (D) | polymer(polypeptide(L)) [427 aa] | ATP-dependent RNA helicase has1 :HAS1_SCHPO | |
2 | b | B 1 (1) | polymer(polyribonucleotide) | RNA (2231-MER) | 300E(L) 327V(A) 328A(N) 330R 335V(K) 338N(K) 357G(K) (identity: 14.3 %/38.9 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:8esq_J_1 identity=38.9% |
queryA 4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103 :** * * ** * ** *** * * *** ** ****** ** ** * * : 8esq_J_1 91:FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLY--------------------------------------: 152 SecStr :GGGS HHHHHHHHHHT B HHHHHHHHHHHTT EEEE TTSSHHHHHHHHHHHHHH--------------------------------------: ExpBur :beebebeeebeebbeebeeeebeebbbebbeebeeeebbbbbbeeebebbbbbbbbbbbbbe--------------------------------------: queryA 104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203 : : 8esq_J_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQT---KFLP-NAPKALIVEPSRELA: 299 : ** * * * * ****: 8esq_J_1 153:-----------------------------------------------------------------------------AL-KFKPRNGTGVIIISPTRELA: 174 SecStr :-----------------------------------------------------------------------------HH-T GGG EEEE SSHHHH: ExpBur :-----------------------------------------------------------------------------ee-ebeeeebbbbbbbbbbbbbb: queryA 300:EQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGR-LDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDG: 398 : * * ** *** * * ** * **** ** * * * ** **** * * * * * : 8esq_J_1 175:LQIFGVAKELLKYHHQT---FGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILP---SEN: 268 SecStr :HHHHHHHHHHGGG S ---EEEE TTS HHHHHHHHHH SEEEE HHHHHHHHHH TT TT EEEEE HHHHHHHT HHHHHHHHHHS --- TT: ExpBur :ebbbbbbebbbeebebe---ebbbbeeeeeeebbeebeebbbbbbbbbebbbebbeebeebebeebebbbbbbbbbbbeeebeeebeebbeebe---eee: Contact :b bb b b b b queryA 399:KRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAV: 498 : * * * * : 8esq_J_1 269:RQTLLFSATQTTKVEDLARISLK-----------------------------------------------------------------------------: 291 SecStr : EEEEEESS HHHHHHHHHHS -----------------------------------------------------------------------------: ExpBur :bbbbbbbeeeeeebeebbeebbe-----------------------------------------------------------------------------: queryA 499:RAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC------------------------------------------------------: 544 : : 8esq_J_1 292:----------------------------------------------PGPLYVNVDXXXXXXXXXXXEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSS: 345 SecStr :----------------------------------------------SS EEEE ----------- EEEEE STTHHHHHHHHHHHTTTSEEEEEES : ExpBur :----------------------------------------------eeeeebeee-----------ebbbbebebeebbbbbbbbbeebeeebbbbbbbb: queryA 545:---------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHRIG: 604 : *** * * * * ** ***** ** * ** * ** *: 8esq_J_1 346:CASVKYMAELLNYIDLPVLD-LHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG: 425 SecStr :HHHHHHHHHHHHHTT EE-S TTS HHHHHHHHHHHHH SSEEEEEEHHHHTTS SEEEE S S HHHHHHH : ExpBur :bebbebbbebbeebebebeb-bbbeeebeebeebbeebeeeeeebbbbbbbbbbeeeeeebebebbbbbbbbbebbbeeee: |