[pdbjlvh2]Protein Model on 8e5t_U

Protein Model on 8e5t_U_1 (TEMPLATE: 8e5t )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(DDX1_HUMAN)	U 1 (p)	polymer(polypeptide(L)) [437 aa]	ATP-dependent RNA helicase HAS1 :HAS1_YEAST

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8e5t_U_1 identity=43.4%

queryA         4:FSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFA: 103
                :* *         * * *     *  **  **  * * *** ** ****** ** ** *                                          :
8e5t_U_1      44:FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLH--------------------------------------: 105
SecStr          :SSSS   HHHHHHHHHHT  S  HHHHHHHHHHHHT  EEEE  TTSSHHHHHHHHHHHHHH--------------------------------------:    
ExpBur          :eeeeeeeeeeeebeeeeeeeeeeeebeeeeeeeeeeebbeeeeeeeeebeeeeeeeeeeeee--------------------------------------:    

queryA       104:IGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHV: 203
                :                                                                                                    :
8e5t_U_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       204:KFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQTL: 303
                :                                                                                                    :
8e5t_U_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       304:NNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQV: 403
                :                                                                                                    :
8e5t_U_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       404:IVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIKE: 503
                :                                                                                                    :
8e5t_U_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       504:HKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVC-----------------------------------------------------------: 544
                :                                                                                                    :
8e5t_U_1     106:-----------------------------------------SLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKG: 164
SecStr          :-----------------------------------------HH   TTT   EEEE SSHHHHHHHHHHHHHHHHSSSS EEEE TTS HHHHHHHHHH :    
ExpBur          :-----------------------------------------eeeeeeeebeebeeebeebeebeeebeeeeeebeeeeeeeeeeeeeeeeeebeeeeeee:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
8e5t_U_1     165:VNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLARISLRPGPLFINVXXXXXXXXXXXL: 264
SecStr          : SEEEE HHHHHHHHHH SS   S   EEEEE HHHHHHHT HHHHHHHHHHS  SS  EEEE SS  HHHHHHHHHH  S    EE ----------- :    
ExpBur          :bbeebbbeebeeeeeeeeeeeeeeebeeeeeeeeebbeeeebeebeeeeeeeeeeeebbbeebbeeeeeebeeeeeeebeeeeeeeee-----------e:    

queryA       545:------------------------------------------------------LHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINV: 590
                :                                                      ***  *   *      *       ********** **  *   *  :
8e5t_U_1     265:EQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQF: 364
SecStr          : EEEEE  TTHHHHHHHHHHHHTTTS EEEEES HHHHHHHHHHHHHTT  EEEE TTS HHHHHHHHHHHHHHS  EEEEEHHHHHTS     SEEEE :    
ExpBur          :eeeeeebeeeebeeeeeeeeeeeeebbeeebbebeeebebebeeeeeeeeeebeebeeeeeeebeebeeeeeeeeeeebbbbeeeeeeeeeeeeebeebe:    

queryA       591:TLPDEKQNYVHRIGRVGRAER: 611
                :  **    * ** **  *   :
8e5t_U_1     365:DPPDDPRDYIHRVGRTARGTK: 385
SecStr          :S  S HHHHHHHHHHHHHH S:    
ExpBur          :eeeeeeeeeeeeeeeeeeebe:

Protein Model on 8e5t_U_1 (TEMPLATE: 8e5t )

Input Residue Numbers for Focused Sites