Protein Model on 8c6j_E_1_S_1 (TEMPLATE: 8c6j )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(DDX1_HUMAN) E 1 (7) polymer(polypeptide(L)) [390 aa] Eukaryotic initiation factor 4A-III :IF4A3_HUMAN
2 b S 1 (E) polymer(polyribonucleotide) PM5 5' Exon 294P 295S(T) 296R 325G 326G 328A(N) 329A(V) 330R(G) 334S(R) 346T 347P 348G 349R 352D 355S(R) 377S(N) 380Y(F) 383F(Q) 513C 514R(N) 515T 516K 547G 552H(K) 554R 572T 573D 574V 594D(N) (identity: 58.6 %/34.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8c6j_E_1 identity=34.4%
queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
                : *  **                *  **   *  *  * **      * ***  *** * *                                        :
8c6j_E_1      39:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------:  98
SecStr          :SSGGGT  HHHHHHHHHHT SS  HHHHHHHHHHHTT  EEE  STTSSHHHHHHHHHHH----------------------------------------:    
ExpBur          :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbbbbbbbbbbbbb----------------------------------------:    

queryA       103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
                :                                                                                                    :
8c6j_E_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293
                :                                                                                               ***  :
8c6j_E_1      99:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 113
SecStr          :-------------------------------------------------------------------------------------T  TTS S  EEEE :    
ExpBur          :-------------------------------------------------------------------------------------ebeeeeeebbbbbbb:    

queryA       294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393
                :* **** *          *           ***         *  *   * *****  *      *       *******  *  *    *       * :
8c6j_E_1     114:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 210
SecStr          :SSHHHHHHHHHHHHHHTTTTT---  EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHTTSS  TT  EEEEESHHHHTSTTTHHHHHHHHHHS T:    
ExpBur          :bbebbbebbbeebeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeebeeebebbeeebee:    
Contact         :bbb                            bb bbb   b           bbbb  b  b                     b  b  b          

queryA       394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493
                : *      **   ****          * *  *     *             * *        **                        * *      * :
8c6j_E_1     211:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 269
SecStr          :T ------EEEEE S  - HHHHHGGGGT SS EEE   HHHHS TTEEEEEEE -------- S------------------------HHHH--HHHHH:    
ExpBur          :eb------bbbbbbbbb-beebbeebeeebeebbbbbbeeeebbbeebebebbeb--------ee------------------------eeeb--bebbe:    

queryA       494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593
                :  *    *      ** *** **   * *                 *     ***    **      *  *  * ** *** *** *   *   **  **:
8c6j_E_1     270:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 355
SecStr          :HHHHHHTTS-----EEEEE SSHHHHHHHHHHH---------HHTT   EE  SSS HHHHHHHHHHHHHTS SEEEE GGGGSS   TTEEEEEESS  :    
ExpBur          :eebeebeee-----bbbbbbeeeeebeebbebb---------eebeeebbbbbeeeebeebeebbeebeeeebebbbbbeebbbbbebeebebbbbbbbb:    
Contact         :                   bbbb                              b    b b                 bbb                   

queryA       594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
                :     * ***** **  * * **  *                   * *   *:
8c6j_E_1     356:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 402
SecStr          :SSHHHHHHHHHTSS TT  EEEEEEE TTTHHHHHHH-----HHHHT   EE:    
ExpBur          :eeeebbbbbbbbbbbeeeebebbbbbeeeeeeebeeb-----beebebebee:    
Contact         :b

Input Residue Numbers for Focused Sites

ex) 2,15,123