[pdbjlvh2]Protein Model on 8c6j_E_1_H

Protein Model on 8c6j_E_1_H_1 (TEMPLATE: 8c6j )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	E 1 (7)	polymer(polypeptide(L)) [390 aa]	Eukaryotic initiation factor 4A-III :IF4A3_HUMAN
2	b		H 1 (A)	polymer(polypeptide(L)) [2261 aa]	Pre-mRNA-processing-splicing factor 8 :PRP8_HUMAN	11P(E) (identity: 0.0 %/34.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8c6j_E_1 identity=34.4%

queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
                : *  **                *  **   *  *  * **      * ***  *** * *                                        :
8c6j_E_1      39:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ----------------------------------------:  98
SecStr          :SSGGGT  HHHHHHHHHHT SS  HHHHHHHHHHHTT  EEE  STTSSHHHHHHHHHHH----------------------------------------:    
ExpBur          :ebeebebeeebbebbeeeeeeebbebbbebbebbeeeebbbbbbebbbbbbbbbbbbbbb----------------------------------------:    
Contact         :        b                                                                                           

queryA       103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
                :                                                                                                    :
8c6j_E_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAP---------KALIVE: 293
                :                                                                                               ***  :
8c6j_E_1      99:-------------------------------------------------------------------------------------CLDIQVRETQALILA: 113
SecStr          :-------------------------------------------------------------------------------------T  TTS S  EEEE :    
ExpBur          :-------------------------------------------------------------------------------------ebeeeeeebbbbbbb:    

queryA       294:PSRELAEQTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQ: 393
                :* **** *          *           ***         *  *   * *****  *      *       *******  *  *    *       * :
8c6j_E_1     114:PTRELAVQIQKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP: 210
SecStr          :SSHHHHHHHHHHHHHHTTTTT---  EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHTTSS  TT  EEEEESHHHHTSTTTHHHHHHHHHHS T:    
ExpBur          :bbebbbebbbeebeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeebeeebebbeeebee:    

queryA       394:VTSDGKRLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILK: 493
                : *      **   ****          * *  *     *             * *        **                        * *      * :
8c6j_E_1     211:AT------QVVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLC: 269
SecStr          :T ------EEEEE S  - HHHHHGGGGT SS EEE   HHHHS TTEEEEEEE -------- S------------------------HHHH--HHHHH:    
ExpBur          :eb------bbbbbbbbb-beebbeebeeebeebbbbbbeeeebbbeebebebbeb--------ee------------------------eeeb--bebbe:    

queryA       494:GEYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLP: 593
                :  *    *      ** *** **   * *                 *     ***    **      *  *  * ** *** *** *   *   **  **:
8c6j_E_1     270:DLYDTLTIT-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLP: 355
SecStr          :HHHHHHTTS-----EEEEE SSHHHHHHHHHHH---------HHTT   EE  SSS HHHHHHHHHHHHHTS SEEEE GGGGSS   TTEEEEEESS  :    
ExpBur          :eebeebeee-----bbbbbbeeeeebeebbebb---------eebeeebbbbbeeeebeebeebbeebeeeebebbbbbeebbbbbebeebebbbbbbbb:    

queryA       594:DEKQNYVHRIGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
                :     * ***** **  * * **  *                   * *   *:
8c6j_E_1     356:NNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 402
SecStr          :SSHHHHHHHHHTSS TT  EEEEEEE TTTHHHHHHH-----HHHHT   EE:    
ExpBur          :eeeebbbbbbbbbbbeeeebebbbbbeeeeeeebeeb-----beebebebee:

Protein Model on 8c6j_E_1_H_1 (TEMPLATE: 8c6j )

Input Residue Numbers for Focused Sites