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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(DDX1_HUMAN) | FA 1 (p) | polymer(polypeptide(L)) [367 aa] | Spliceosome RNA helicase DDX39B :DX39B_HUMAN | |
2 | b | BA 1 (l) | polymer(polypeptide(L)) [16 aa] | THO complex subunit 4 :THOC4_HUMAN | 389N(Q) 397D(H) (identity: 0.0 %/33.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7znk_FA_1 identity=33.6% |
queryA 11:PEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAFAIGSDGLC: 110 :** * * * * ** * *** * *** * * : 7znk_FA_1 54:PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAXXXMGKTAVFVLATLQ------------------------------------------------: 105 SecStr :HHHHHHHHHHT S HHHHHHHHHHTTT EEEE --- HHHHHHHHHHH------------------------------------------------: ExpBur :eebeebeeebeeeeebebbeebbeebeeeebbbbbe---eebebbbbbbbbe------------------------------------------------: queryA 111:CQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGHVKFSKNGK: 210 : : 7znk_FA_1 -1:----------------------------------------------------------------------------------------------------: -1 SecStr :----------------------------------------------------------------------------------------------------: ExpBur :----------------------------------------------------------------------------------------------------: queryA 211:DLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPK----------ALIVEPSRELAE: 300 : * **** : 7znk_FA_1 106:------------------------------------------------------------------------------QLEPVTGQVSVLVMCHTRELAF: 127 SecStr :------------------------------------------------------------------------------H TT EEEE S HHHHH: ExpBur :------------------------------------------------------------------------------ebeeeeebbbbbbbbeeeebbe: queryA 301:QTLNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLE-NGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGK: 399 :* * ** * * ** ** * ******** * *** *** * * * * * * *: 7znk_FA_1 128:QISKEYERFSKYMPNVKVA--VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD---MRRDVQEIFRMTPHEK: 222 SecStr :HHHHHHHHHTTT TT EE--EE TTS HHHHHHHHHSS SEEEE HHHHHHHHHHTSS TT EEEEETHHHHHHSHH---HHHHHHHHHHHS TTS: ExpBur :ebbebbeebbeebeebeeb--ebeeeeeeeebeeebeeebbbbbbbbbebbbebbeeebbebeebebbbbbebbebbeeee---bbeebeebbeebbeeb: Contact : b b queryA 400:RLQVIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVH-----HVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKG: 494 : ** **** * * * * * * * * * * * ** : 7znk_FA_1 223:--QVMMFSATL-SKEIRPVCRKFMQDPMEIFVXXXXKL--TLHGLQQYYVKLKDNEKNRKLFDLL--------DVL------------------------: 285 SecStr :--EEEEEES - TTHHHHHHTT SS EEE ---- --B TTEEEEEEE STTHHHHHHHHH--------HH ------------------------: ExpBur :--bbbbbbeeb-beebbeebeebbeebeebee----eb--ebeebebbebebeeeebeeebbebb--------eeb------------------------: queryA 495:EYAVRAIKEHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPD: 594 : * ** * * * * * * ** ** * * * ** ** * * * : 7znk_FA_1 286:----------EFNQVVIFVKSVQRCIALAQLLVEQN---------FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE: 366 SecStr :---------- SEEEEE SSHHHHHHHHHHHHTSS--------- EEEE SSS HHHHHHHHHHHHTTS SEEEES SS TTEEEEEESS S: ExpBur :----------ebebbbbbbeeeeebeebbeebeeee---------eebbbbbeebeeeebeeebeebeeeeeebbbbbeeeeebbebeebbbbbbbbbbe: queryA 595:EKQNYVHRIGRVGRAERMGLAISLVATEKE: 624 : * ** * ** **** * * : 7znk_FA_1 367:DSDTYLHRVARAGRFGTKGLAITFVSDEND: 396 SecStr :SHHHHHHHH B SS EEEEEEE SHHH: ExpBur :ebebbbebbbbeeeeeeebbbbbbbeeeeb: |