[pdbjlvh2]Protein Model on 7znj_A_1_C

Protein Model on 7znj_A_1_C_1 (TEMPLATE: 7znj )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(DDX1_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [382 aa]	Eukaryotic initiation factor 4A-III, N-terminally processed :IF4A3_HUMAN
2	b		C 1 (C)	polymer(polypeptide(L)) [91 aa]	RNA-binding protein 8A :RBM8A_HUMAN	642R(Q) 644K(D) (identity: 0.0 %/33.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7znj_A_1 identity=33.7%

queryA         3:AFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYETLKDQQEGKKGKTTIKTGASVLNKWQMNPYDRGSAF: 102
                : *  **                *  **   *  *  * **      * ***  *** * *         *                              :
7znj_A_1      17:TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQ------------------------------:  86
SecStr          :SGGGS   HHHHHHHHHHT  S  TTHHHHHHHHHTT  EEEE  TTSSHHHHHHHHHHHS  SS  S  ------------------------------:    
ExpBur          :ebeebebeeebbebbeeeeeeebbebbeebbebbeeeebbbbbbebbbebebbbbbbbbbebeeeeeebb------------------------------:    

queryA       103:AIGSDGLCCQSREVKEWHGCRATKGLMKGKHYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFDNYGEEFTMHDTIGCYLDIDKGH: 202
                :                                                                                                    :
7znj_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       203:VKFSKNGKDLGLAFEIPPHMKNQALFPACVLKNAELKFNFGEEEFKFPPKDGFVALSKAPDGYIVKSQHSGNAQVTQTKFLPNAPKALIVEPSRELAEQT: 302
                :                                                                                      ***  * **** * :
7znj_A_1      86:-------------------------------------------------------------------------------------QALILAPTRELAVQI: 100
SecStr          :------------------------------------------------------------------------------------- EEEE SSHHHHHHH:    
ExpBur          :-------------------------------------------------------------------------------------bbbbbbbbebbbebb:    

queryA       303:LNNIKQFKKYIDNPKLRELLIIGGVAARDQLSVLENGVDIVVGTPGRLDDLVSTGKLNLSQVRFLVLDEADGLLSQGYSDFINRMHNQIPQVTSDGKRLQ: 402
                :         *           ***         *  *   * *****  *      *       *******  *  *    *       *  *      *:
7znj_A_1     101:QKGLLALGDYMN---VQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT------Q: 191
SecStr          :HHHHHHHTTTTT---  EEEE TTS HHHHHHHHHH  SEEEE HHHHHHHHHTT S  TT  EEEEETHHHHTSTTTHHHHHHHHHTS TT ------E:    
ExpBur          :bebbeebbeebe---bebbbbbbeeeeeebeeebeebbbbbbbbbebbbebbeeebbebeebebbbbbbbbebbeeebeeebeebeeebeeeb------b:    

queryA       403:VIVCSATLHSFDVKKLSEKIMHFPTWVDLKGEDSVPDTVHHVVVPVNPKTDRLWERLGKSHIRTDDVHAKDNTRPGANSPEMWSEAIKILKGEYAVRAIK: 502
                :*   ****          * *  *     *             * *        **                        * *      *   *    * :
7znj_A_1     192:VVLISATL-PHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAV--------ER------------------------EEWK--FDTLCDLYDTLTIT: 256
SecStr          :EEEEES  - HHHHHHGGGT SS EEE   TTS S TTEEEEEEE --------SS------------------------GGGH--HHHHHHTHHHHSSS:    
ExpBur          :bbbbbbbb-eeebbebbeebbeebbebbbeeeebbeebbebbbbeb--------ee------------------------eeeb--bebbbebbeebeee:    

queryA       503:EHKMDQAIIFCRTKIDCDNLEQYFIQQGGGPDKKGHQFSCVCLHGDRKPHERKQNLERFKKGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYVHR: 602
                :     ** *** **   * *                 *     ***    **      *  *  * ** *** *** *   *   **  **     * **:
7znj_A_1     257:-----QAVIFCNTKRKVDWLTEKM---------REANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR: 342
SecStr          :-----EEEEE SSHHHHHHHHHHH---------HHTT    EE TTS HHHHHHHHHHHHTTSS EEEE TTSTTT   TTEEEEEESS  SSHHHHHHH:    
ExpBur          :-----bbbbbbeeeebbeebbeeb---------eeeeeebbbbbeebebeebeebbeebeeeebebbbbbebbbbbbebeebebbbbbbbbeeebbbbbb:    

queryA       603:IGRVGRAERMGLAISLVATEKEKVWYHVCSSRGKGCYNTRLKE: 645
                :*** **  * * **  *                   * *   *:
7znj_A_1     343:IGRSGRYGRKGVAINFVKNDDIRILRDI-----EQYYSTQIDE: 380
SecStr          :HTTSSTTS  EEEEEEE TTTHHHHHHH-----HHHTT   EE:    
ExpBur          :bbbbbbeeeebebbbbbeeeeeeebeeb-----beebebebee:    
Contact         :                                       b b

Protein Model on 7znj_A_1_C_1 (TEMPLATE: 7znj )

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